Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,817,975 – 3,818,082 |
Length | 107 |
Max. P | 0.807586 |
Location | 3,817,975 – 3,818,082 |
---|---|
Length | 107 |
Sequences | 3 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 86.03 |
Mean single sequence MFE | -20.07 |
Consensus MFE | -16.29 |
Energy contribution | -15.96 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.12 |
Mean z-score | -2.18 |
Structure conservation index | 0.81 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.807586 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3817975 107 - 27905053 AAAUGCUCAAAGGUUUCGAAUUUUCCAAAACCUAUUGAAACUUCUUCAUAUUACCAUAUUUCUGACUGACCUAAAUAGUUAGUGAAUAAUGUGGAAAAUUAAAUCUA-- ......((((((((((.(.......).)))))).))))...............(((((((..(.((((((.......)))))).)..))))))).............-- ( -20.70) >DroSec_CAF1 45855 97 - 1 AAAUGCUCAAAGGUUUCGAAGUU------------UGAAACUUCUUCAUGUUACCAGAUUUCUGACUGACCUAAAAAGUUAGUGAAUAACAUGGAAAAUUACAACUAAU ..........(((((((((...)------------)))))))).(((((((((.(((....)))((((((.......))))))...))))))))).............. ( -20.70) >DroSim_CAF1 50432 97 - 1 AAAUGCUCAAAGGUUUCGAAGUU------------UGAAACUUCUUCAUGUUACCAGAUUUCUGACUGACCUAAAAAGUUAGUGAAUAAUAUGGAAAAUUACAACUAAU ..........(((((((((...)------------)))))))).(((((((((.(((....)))((((((.......))))))...))))))))).............. ( -18.80) >consensus AAAUGCUCAAAGGUUUCGAAGUU____________UGAAACUUCUUCAUGUUACCAGAUUUCUGACUGACCUAAAAAGUUAGUGAAUAAUAUGGAAAAUUACAACUAAU ..........((((((((.................)))))))).(((((((((.(((....)))((((((.......))))))...))))))))).............. (-16.29 = -15.96 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:52 2006