Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,817,686 – 3,817,796 |
Length | 110 |
Max. P | 0.952365 |
Location | 3,817,686 – 3,817,796 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 83.93 |
Mean single sequence MFE | -33.32 |
Consensus MFE | -27.36 |
Energy contribution | -27.08 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.13 |
Mean z-score | -2.17 |
Structure conservation index | 0.82 |
SVM decision value | 1.42 |
SVM RNA-class probability | 0.952365 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3817686 110 + 27905053 GGUGUUGUUGCUCUCGGGGGCGGUUUACUACGCUCACUGAACGCAGCAGCGUUUCAAGUUGCAAGUUGUUGAAAUUCACACAAAAAA-CAAUCAAG--AUAACUCUU-UAUG----AA ...((((((((..(((((((((........))))).))))..))))))))(((((..((((....((((((.....)).))))....-))))...)--).)))....-....----.. ( -29.70) >DroSec_CAF1 45580 112 + 1 GGUGUUGUUGCUCUCGGGGGCGGUUUACUCCGCUCACUGAACGCAGCAGCGUUUCAAGUUGCAAGUUGUUGAAAUUCACACAGAAAA-AAAUCAAG----AACUCUG-UAUAUAUAUA ...((((((((..((((((((((......)))))).))))..)))))))).........((((((((.((((..(((.....)))..-...)))).----)))).))-))........ ( -35.90) >DroSim_CAF1 50159 109 + 1 GGUGUUGUUGCUCUCGGGGGCGGUUUACUCCGCUCACUGAACGCAGCAGCGUUUCAAGUUGCAAGUUGUUGAAAUUCACACAGAAAAAAAAACAAG----AACUCUG-UAUG----UA ...((((((((..((((((((((......)))))).))))..)))))))).........((((((((.(((...(((.....))).......))).----)))).))-))..----.. ( -33.40) >DroEre_CAF1 36994 97 + 1 GGUGUUGUUGCUCUCGGGGGCGGUUUACUCCGCUCACUGAACGCAGCAGCGUUUCAAGUUGCAAGUUGUGGAAAUUCAUGCAGAAAU-AAUUCGAA--------------------AA ...((((((((..((((((((((......)))))).))))..)))))))).((((....((((.(..((....)).).))))(((..-..))))))--------------------). ( -33.50) >DroYak_CAF1 49691 113 + 1 GGUGUUGUUGCUUUUGGGGGCGGUUUACUCCGCUCACUGAACGCAGCAGCGUUUUAAGUUGCAAGUUGUUGAAAUUCACACAGAAAU-AUUUGGAAUUAUGACUCCGAAAUG----AA ((.((((((((.((..(((((((......)))))).)..)).))))))))(((...((((.((((((((((.....)).))).....-))))).))))..))).))......----.. ( -34.10) >consensus GGUGUUGUUGCUCUCGGGGGCGGUUUACUCCGCUCACUGAACGCAGCAGCGUUUCAAGUUGCAAGUUGUUGAAAUUCACACAGAAAA_AAAUCAAG____AACUCUG_UAUG____AA .((((((((((..((((((((((......)))))).))))..))))))(((........)))...............))))..................................... (-27.36 = -27.08 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:51 2006