| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,816,399 – 3,816,496 |
| Length | 97 |
| Max. P | 0.875617 |
| Location | 3,816,399 – 3,816,496 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 91.15 |
| Mean single sequence MFE | -24.42 |
| Consensus MFE | -19.98 |
| Energy contribution | -19.50 |
| Covariance contribution | -0.48 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.875617 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3816399 97 + 27905053 ACAUGUAUUUCUUUACAAGGCCAACUGGCCGAGCGG--UUUACUGACUGGGAUUUUGGCUUUUUGGUCUCGGAUUUUAUUUCGUUACUUUUUGAGAUAU ....(((((((......(((((((..((((((((((--((....)))))....)))))))..)))))))((((......)))).........))))))) ( -26.90) >DroSec_CAF1 44307 96 + 1 --AUGUAUUUCUUUACAAGGCCAACCGGCCGAGCGGGGU-UACUGACUGGGAUUUUGGCUUUCUGGUCUCCGAAUUUAUUUUGUUACUUUUUGAGAUAU --.((((......))))(((((((....((.(((((...-..))).)).))...)))))))....(((((.(((..((......))..))).))))).. ( -23.80) >DroSim_CAF1 48889 97 + 1 --AUGUAUUUCUUUACAAGGCCAACCGGCCGAGCGGGGUUUACUGACUGGGAUUUUGGCUUUCUGGUCUUCGAAUUUAUUUUGUUACUUUCUGAGAUAU --.((((......))))(((((((....((.(((((......))).)).))...)))))))....(((((.(((..((......))..))).))))).. ( -24.00) >DroEre_CAF1 35720 95 + 1 --AUGUAUUUCUUUACAAGGCCAACCGGCCGAGCGG--UUUGCUGACUGGGAUUUUGGCUUUUUGGUCUCGGAUUUUAUUUUCUUACUUUUUGAAAUAU --..(((((((......(((((((..((((((((((--((....)))))....)))))))..))))))).(((........)))........))))))) ( -24.20) >DroYak_CAF1 48441 95 + 1 --AUGUAUUUCUUUACAAGGCCAACCGGCCGAGCGG--UUUACUGACUGGGAUUUUGUGUUUUUGGUCUCGGACUUUAUUUUGUUACUUUUGGAAAUAU --..((((((((......((((....)))).(((((--..((..(.((((((((..(....)..)))))))).)..))..)))))......)))))))) ( -23.20) >consensus __AUGUAUUUCUUUACAAGGCCAACCGGCCGAGCGG__UUUACUGACUGGGAUUUUGGCUUUUUGGUCUCGGAAUUUAUUUUGUUACUUUUUGAGAUAU ....(((((((.......((((....))))..............(((..(((........)))..)))........................))))))) (-19.98 = -19.50 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:49 2006