Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,814,987 – 3,815,084 |
Length | 97 |
Max. P | 0.824111 |
Location | 3,814,987 – 3,815,084 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 87.45 |
Mean single sequence MFE | -34.24 |
Consensus MFE | -20.90 |
Energy contribution | -21.46 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.12 |
Mean z-score | -3.44 |
Structure conservation index | 0.61 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.824111 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3814987 97 + 27905053 GCAGCAGCGGCAGCAGCGGCA--AGUGUAAAGCGGCAUUUGUAAUUGUUGUUUGUGGCCAAGGCGCUGCUGUUGUGCGUUACAUUUUAACGCUUCAUUA (((((((((((((((((((((--(((((......))))))))...)))))))....((....)))))))))))))((((((.....))))))....... ( -40.90) >DroSec_CAF1 42975 88 + 1 GCAG---------CAGCGGCA--AGUGUAAAGCGGCAUUUGUAAUUGUUGUUUCUGGCCGGGGCGCUGCUGUUGUGCGUUACAUUUUAACGCUUCAUUA ((((---------(((((((.--......((((((((........))))))))...((....)))))))))))))((((((.....))))))....... ( -34.10) >DroSim_CAF1 47547 88 + 1 CCAG---------CAGCGGCA--AGUGUAAAGCGGCAUUUGUAAUUGUUGUUUGUGGCCGGGGCGCUGCCGUUGUGCGUUACAUUUUAACGCUUCAUUA ...(---------((((((((--.((((....((((......(((....)))....))))..)))))))))))))((((((.....))))))....... ( -31.70) >DroEre_CAF1 34434 90 + 1 GCGG---------UAGCGGCAGCAGUCUAAAGCAGCAUUUGUAAUUGUUGUUUGUGGCCUGGCCGCUGCUGUUGUGCGUUACAUUUUAACGCUUCAUUA ((((---------(((((((..(((.(((((((((((........)))))))).))).))))))))))))))...((((((.....))))))....... ( -37.70) >DroYak_CAF1 47112 82 + 1 GCGG---------CA--------AGUGUAAAGCGGCAUUUGUAAUUGUUGUUUGUGGCCUGGCCGCUGCUGUUGUGCGUUACAUUUUAACGCUUCAUUA ((((---------(.--------((.((.((((((((........))))))))...)))).))))).........((((((.....))))))....... ( -26.80) >consensus GCAG_________CAGCGGCA__AGUGUAAAGCGGCAUUUGUAAUUGUUGUUUGUGGCCGGGGCGCUGCUGUUGUGCGUUACAUUUUAACGCUUCAUUA .............(((((((.........((((((((........))))))))..(((......)))))))))).((((((.....))))))....... (-20.90 = -21.46 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:47 2006