Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 699,606 – 699,736 |
Length | 130 |
Max. P | 0.987013 |
Location | 699,606 – 699,716 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 73.98 |
Mean single sequence MFE | -30.52 |
Consensus MFE | -12.26 |
Energy contribution | -16.07 |
Covariance contribution | 3.81 |
Combinations/Pair | 1.21 |
Mean z-score | -2.68 |
Structure conservation index | 0.40 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.798616 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 699606 110 - 27905053 U-AUGGCUAGCAUACAAAUGGCCAUUGAUCAAUCUAUGGUACUUGUCCGUUCUAGAGCCCAACACUUUGUUUUUGAUCGUUAGGUCCAAAGCAAUUGA-------AAAUUGCCUACUU .-..(((((((..((((...(((((.((....)).)))))..))))..)))....))))...((..(((((((.((((....)))).))))))).)).-------............. ( -23.20) >DroSec_CAF1 118976 110 - 1 U-AUGGCUAGCAUAAAAAUGGCUUUUGAUCAAUCUUUGGUACUUGUCCGUUCUCGGACACAACACUUUGUGUUUGAUGGUUAAGUCCAAUGCAAUUGG-------CAUUUGGUUAUUU (-(((.....)))).((((((((..((.(((((..((((.(((((.(((...((((((((((....))))))))))))).)))))))))....)))))-------))...)))))))) ( -30.00) >DroSim_CAF1 121147 110 - 1 U-AUGGCUACCAUAUAAAUGGCCAUUGAUCAAUCUUUGGUACUUGUCCGUUCUCGGACACAACACUUUGUGUUUGAUGGUUAAGUCCAAUGAAAUUGG-------CAUUAGGUUAUUU (-((((...))))).((((((((..((.((((((.((((.(((((.(((...((((((((((....))))))))))))).))))))))).))..))))-------))...)))))))) ( -32.80) >DroYak_CAF1 129553 108 - 1 UCAUUGUCAGCAGAUUAAUGGCCAUUAAUCAAUUUUUGGU----------UCGCUGAACCAACACUCGGUAUUUGAGUGUAAUGCCCAAUGUAAUUGGGCAUUAGCAAUUGGCUAUGU .(((.((((((.(((((((....))))))).....(((((----------((...)))))))((((((.....))))))(((((((((((...)))))))))))))...)))).))). ( -36.10) >consensus U_AUGGCUAGCAUAUAAAUGGCCAUUGAUCAAUCUUUGGUACUUGUCCGUUCUCGGACACAACACUUUGUGUUUGAUGGUUAAGUCCAAUGCAAUUGG_______CAAUUGGCUAUUU ..(((((((.........)))))))...(((((..((((.(((((.(((((...((((((((....))))))))))))).)))))))))....))))).................... (-12.26 = -16.07 + 3.81)
Location | 699,639 – 699,736 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 75.25 |
Mean single sequence MFE | -23.40 |
Consensus MFE | -14.50 |
Energy contribution | -16.00 |
Covariance contribution | 1.50 |
Combinations/Pair | 1.25 |
Mean z-score | -2.28 |
Structure conservation index | 0.62 |
SVM decision value | 2.06 |
SVM RNA-class probability | 0.987013 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 699639 97 - 27905053 UGAAAUAC-------AUUGAUUGAUAUU-AUGGCUAGCAUACAAAUGGCCAUUGAUCAAUCUAUGGUACUUGUCCGUUCUAGAGCCCAACACUUUGUUUUUGAUC .(((((((-------((.(((((((...-(((((((.........)))))))..))))))).))).....(((..(((....)))...)))...))))))..... ( -20.80) >DroSec_CAF1 119009 97 - 1 CCCAAUAC-------AUUGAUUGAUAUU-AUGGCUAGCAUAAAAAUGGCUUUUGAUCAAUCUUUGGUACUUGUCCGUUCUCGGACACAACACUUUGUGUUUGAUG .......(-------(..(((((((...-..(((((.........)))))....)))))))..)).....((((((....)))))).(((((...)))))..... ( -24.70) >DroSim_CAF1 121180 97 - 1 CCCAAUAC-------AUUGAUUGAUAUU-AUGGCUACCAUAUAAAUGGCCAUUGAUCAAUCUUUGGUACUUGUCCGUUCUCGGACACAACACUUUGUGUUUGAUG .......(-------(..(((((((...-(((((((.........)))))))..)))))))..)).....((((((....)))))).(((((...)))))..... ( -28.70) >DroYak_CAF1 129593 95 - 1 CGAAAUACUAACCAUACUAAUUGAUAUUCAUUGUCAGCAGAUUAAUGGCCAUUAAUCAAUUUUUGGU----------UCGCUGAACCAACACUCGGUAUUUGAGU ..(((((((...........((((((.....))))))..(((((((....))))))).....(((((----------((...))))))).....))))))).... ( -19.40) >consensus CCAAAUAC_______AUUGAUUGAUAUU_AUGGCUAGCAUAUAAAUGGCCAUUGAUCAAUCUUUGGUACUUGUCCGUUCUCGGACACAACACUUUGUGUUUGAUG ..................(((((((....(((((((.........)))))))..)))))))..................((((((((((....)))))))))).. (-14.50 = -16.00 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:56 2006