| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,806,165 – 3,806,264 |
| Length | 99 |
| Max. P | 0.624661 |
| Location | 3,806,165 – 3,806,264 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 84.96 |
| Mean single sequence MFE | -20.35 |
| Consensus MFE | -13.18 |
| Energy contribution | -13.93 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.624661 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3806165 99 - 27905053 G--CCUGCUUCCAAAGUUACCACAUUUCUAACCGAGAUGUAUUCUUAUGCAGGCACUA--GCCUGUGGAUGGACAAAGCACUUUAAAAACAACAUAACUAUAU .--..((((((((........(((((((.....)))))))..(((...((((((....--)))))))))))))...))))....................... ( -23.20) >DroSec_CAF1 34246 99 - 1 G--CCUGCCUCCAAAGUUACCACAU-UCUAACCGAGAUGUAUUUUUAUGCAGGCUCUA-AGCCUGUGGAUGGGCAAACUACUUUAAAAACAACAUAACUAUAU (--((((..(((.........((((-(........)))))........((((((....-.))))))))))))))............................. ( -20.90) >DroSim_CAF1 38763 99 - 1 G--CCUGCUUCCAAAGUUACCACAU-UCUAACCGAGAUGUAUUUUUAUGCAGGCACUA-AGCCUGUGGAUGGGCAAACUACUUUAAAAACAACAUAACUAUAU (--(((...(((.........((((-(........)))))........((((((....-.))))))))).))))............................. ( -21.40) >DroYak_CAF1 38304 91 - 1 AUGCCUUCUUCCAAAGUUAUCACAU-UCUAACCGAGAUGUAUUUUUAUGACGGUACUAC--CCUGUGGAUGGGCAAACUACUUUUAAAA-ACCUU-------- .(((((...((((..(((((.((((-(........)))))......)))))((.....)--)...)))).)))))..............-.....-------- ( -15.90) >consensus G__CCUGCUUCCAAAGUUACCACAU_UCUAACCGAGAUGUAUUUUUAUGCAGGCACUA__GCCUGUGGAUGGGCAAACUACUUUAAAAACAACAUAACUAUAU ...((....(((.........((((.((.....)).))))........((((((......))))))))).))............................... (-13.18 = -13.93 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:43 2006