Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,805,472 – 3,805,586 |
Length | 114 |
Max. P | 0.982225 |
Location | 3,805,472 – 3,805,586 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.34 |
Mean single sequence MFE | -26.16 |
Consensus MFE | -22.36 |
Energy contribution | -23.08 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.03 |
Mean z-score | -2.04 |
Structure conservation index | 0.85 |
SVM decision value | 1.91 |
SVM RNA-class probability | 0.982225 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3805472 114 - 27905053 UAUUAUUUGGAAAUUUGGAAAGAAAUUGCAGGGAGAGGCCUGGAUUCAAUAGCUAUUAUAUUUUAACCAGUGCGGAAAACGAAAUAGUUGAAUCAAAAGGUUAAACAACAAUCU------ .....((((.((.(((.....))).)).))))....(((((.((((((...((((((.(.((((..((.....)))))).).))))))))))))...)))))............------ ( -16.90) >DroSec_CAF1 33556 114 - 1 UUUUAUUUGGAAAUUUCGAAAGAAAUUGUAGGGAGAGGCCUGGAUUCAAUAGCUAUUAUAUUUUAACCAGUUCGGAAAAUGAAAUAGUUGAAUCAAAAGGUUAAACAACAAUCU------ ......(((..((((((....)))))).........(((((.((((((...((((((.((((((..((.....)))))))).))))))))))))...)))))......)))...------ ( -26.10) >DroSim_CAF1 38078 114 - 1 UUUUAUUUGGAAAUUUCGAAAGAAAUUGUAGGGAGAGGCCUGGAUUCAAUAGCUAUUAUAUUUUAACCAGUUCGGAAAAUGAAAUAGUUGAAUCAAAAGGUUAAACAACAAUCU------ ......(((..((((((....)))))).........(((((.((((((...((((((.((((((..((.....)))))))).))))))))))))...)))))......)))...------ ( -26.10) >DroEre_CAF1 25039 120 - 1 UUUUAUUUGGAAAGUUCGAAAGAAAUUGUAGGGAAAGGCCUGGAUUCCAAAGCUAUUAUAUUUUAACCAGUGCGCAAAAUGAAAUAGUGGAAUCAAAAGGUUGAACCCGUAUCUGAACUG .....((..((...(((....)))......(((...(((((.((((((...((((((.((((((...........)))))).))))))))))))...)))))...)))...))..))... ( -31.70) >DroYak_CAF1 37613 120 - 1 UUUUAUUUGGAAAAAUCGAAAGAAAUUGUAGGGAGAGGCCUGGAUUCCGAAGCUAUUAUAUUUUAACCAGUGCGGAAAAUGAAAUAGUGGAAUCAAAAGGUUAAACCGCUAUCUGAACUG .....((..((....((....)).....(((((...(((((.((((((...((((((.((((((..((.....)))))))).))))))))))))...)))))...)).)))))..))... ( -30.00) >consensus UUUUAUUUGGAAAUUUCGAAAGAAAUUGUAGGGAGAGGCCUGGAUUCAAUAGCUAUUAUAUUUUAACCAGUGCGGAAAAUGAAAUAGUUGAAUCAAAAGGUUAAACAACAAUCU______ ........(((((((((....)))))).........(((((.((((((...((((((.((((((..((.....)))))))).))))))))))))...))))).........)))...... (-22.36 = -23.08 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:42 2006