Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,794,706 – 3,794,826 |
Length | 120 |
Max. P | 0.666791 |
Location | 3,794,706 – 3,794,826 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.25 |
Mean single sequence MFE | -38.88 |
Consensus MFE | -30.25 |
Energy contribution | -30.73 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.07 |
Mean z-score | -1.64 |
Structure conservation index | 0.78 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.666791 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3794706 120 + 27905053 UUUUAGCCCUUUUUAUGGCGGAGUGUCGAAAGAGCUUGGCUGGGGGCAUCUGCAUUUGCAAUCUCAUAAAUCAAUUAGCAAAGAGCGGCGCGGGAAGAGUAUCUCGCGGAUACGCAUCCG .....((((((.....(((.((((.((....)))))).)))))))))..((((.(((((..................)))))..)))).((((((......))))))((((....)))). ( -40.17) >DroSec_CAF1 24043 120 + 1 UUUUAGCCCACUUUAUGGCGGAGUGUCGAAAGAGCUUGGCUGCAGGCAUCUGCAUUUGCAAUCUCAUAAAUCAAUUAGCAAAGAGCGGCGCGGGAAGAGUAUCUCGCGGAUACGCAUCCG .....(((...((((((((.((((.((....)))))).))(((((....)))))..........)))))).......((.....)))))((((((......))))))((((....)))). ( -37.60) >DroSim_CAF1 28522 120 + 1 UUUUAGCCCACUUUAUGGCGGAGUGUCGAAAGAGCUUGGCUGGAGGCAUCUGCAUUUGCAAUCUCAUAAAUCAAUUAGCAAAGAGCGGCGCGGGAAGAGUAUCUCGCGGAUACGCAUCCG ....((((((((((.....))))))((....))....))))(((.((..((((.(((((..................)))))..))))(((((((......))))))).....)).))). ( -36.67) >DroEre_CAF1 15212 120 + 1 UUUUAGCCAACUUAAUGGCGGAGUGUCGAAAGAGCUUGGCUGAAGGCAUCUGCAGAUGCAAUCUCAUAAAUCAAUUGACAAAGAGCGGCGCGAGAAGAGUAUCUCGCGGAUACGCAUCCG .....((((......))))(((.((((((..((..(((...((..(((((....)))))..))...))).))..))))))....(((.(((((((......)))))))....))).))). ( -40.50) >DroYak_CAF1 26315 110 + 1 UUUU----------AUGGCGGAGUGUCGAAAGAGCUUCGCUGGAGGCAUCUGCAGUUGCAAUCUCAUAAAUCAAUUAGCAAAGAGCGGCGCGGGAAGAGUAUCUCGCGGAUAUGCAUCCG ....----------..((((((((.((....))))))))))(((.((((((((..((((..................))))...))))(((((((......)))))))...)))).))). ( -39.47) >consensus UUUUAGCCCACUUUAUGGCGGAGUGUCGAAAGAGCUUGGCUGGAGGCAUCUGCAUUUGCAAUCUCAUAAAUCAAUUAGCAAAGAGCGGCGCGGGAAGAGUAUCUCGCGGAUACGCAUCCG ................(((.((((.((....)))))).)))(((.((..((((..((((..................))))...))))(((((((......))))))).....)).))). (-30.25 = -30.73 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:37 2006