Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,792,927 – 3,793,045 |
Length | 118 |
Max. P | 0.546016 |
Location | 3,792,927 – 3,793,045 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.71 |
Mean single sequence MFE | -38.64 |
Consensus MFE | -27.36 |
Energy contribution | -27.76 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.15 |
Mean z-score | -1.71 |
Structure conservation index | 0.71 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.546016 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3792927 118 - 27905053 UC--CAUAUCUGGUACCAAACCAAUUUGCUUUCUCCCAGUUGAUGUGCAGUGCAUCCAGCAGUCGAGCAGGUUGGAUGCUCGCACUCGUUUCUUUUUUCGCGGUGCAGCAACCAGAGUGC ..--(((.((((((......(((((((((((.((....((((((((.....)))).))))))..))))))))))).((((.((((.(((..........)))))))))))))))))))). ( -40.60) >DroSec_CAF1 22334 120 - 1 UCCCCGUAUAUGGUACAAACCCAAUUUGCUUUUUCCUAGUUGGUGUGCAGUGCAUCCAACAGUCGAGCAGGUCGGAUGCUCGCACUCGUUUCUUUUUUCGCGGUGCAGCAACCGGAGUGC .....((((.((((......((.((((((((....((.(((((.((((...)))))))))))..)))))))).)).((((.((((.(((..........)))))))))))))))..)))) ( -36.80) >DroSim_CAF1 26822 118 - 1 UC--CGCAUCUGGUACAAACCCAAUUUGCUUUUUCCUAGUUGGUGUGCAGUGCAUCCAGCAGUCGAGCAGGUCGGAUGCUCGCACUCGUUUCUUUUUUCGCGGUGCAGCAACCAGAGUGC ..--.(((((((((......((.((((((((....((.(((((.((((...)))))))))))..)))))))).)).((((.((((.(((..........))))))))))))))))).))) ( -42.40) >DroEre_CAF1 13410 117 - 1 UC--CGUAUCUGGUAGAA-ACCAAUUUGGUUUUUCUUUGUUGGGCUGUAGUGCAUCCAGCAGUCUUGCAGGUCGGAUGCUCGCACUCGUUUCUUUUUUCGCGGUGCAGCAACCAGAGUGC ..--.(((((((((((((-(((.....))))))).(((((.(((((((.(......).))))))).))))).....((((.((((.(((..........))))))))))))))))).))) ( -37.60) >DroYak_CAF1 24503 117 - 1 UC--CGUAUCUGGUACAACACCAAUUUAGGUUUUCCUCGUUGGGCUGCAGUGCAUCCAGCAGUUUUGCAGGCCGGAUACUCUCACUCGUUU-UAUUUUCGCGAUGCAGCAACCAGAGUGC ..--.(((((((((......(((((..(((....))).))))).(((((((((.....)))...)))))))))))))))...((((((...-......)((......)).....))))). ( -35.80) >consensus UC__CGUAUCUGGUACAAAACCAAUUUGCUUUUUCCUAGUUGGUGUGCAGUGCAUCCAGCAGUCGAGCAGGUCGGAUGCUCGCACUCGUUUCUUUUUUCGCGGUGCAGCAACCAGAGUGC .....(((((((((......(((((.............)))))..(((.(.((((((.((.(.....)..)).)))))).)((((.(((..........))))))).))))))))).))) (-27.36 = -27.76 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:33 2006