Locus 1278

Sequence ID 3R_DroMel_CAF1
Location 3,791,978 – 3,792,094
Length 116
Max. P 0.935579
window2091

overview

Window 1

Location 3,791,978 – 3,792,094
Length 116
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.28
Mean single sequence MFE -38.88
Consensus MFE -35.12
Energy contribution -35.32
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.61
Structure conservation index 0.90
SVM decision value 1.25
SVM RNA-class probability 0.935579
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3791978 116 - 27905053
CGUUGCAAACUGCCUUGUAAUUGCCUGACAUAAAUGCUCGUGUGUACAAGGCUUAAUGGCGAUAGCAGCAGGUACGCUCAGCGAUUGCCAUCUACAACU----GGCGGUAUGACUGCUGA
.(((((.....((((((((...((.(((((....)).))).)).))))))))......)))))..((((((...(((...)))(((((((........)----))))))....)))))). ( -38.80)
>DroSec_CAF1 21394 120 - 1
CGUUGCAAACUGCCUUGUAAUUGCCUGACAUAAAUGCUCGUGUGUACAAGGCUUAAUGGCGAUAGCAGCAGGUACGCUCAGCGAUUGCCAUCUACAACUGACUGACGGUAUGACUGCUGG
.(((((.....((((((((...((.(((((....)).))).)).))))))))......)))))..((((((((((..((((((.(((.......))).)).))))..))))..)))))). ( -36.30)
>DroSim_CAF1 25875 116 - 1
CGUUGCAAACUGCCUUGUAAUUGCCUGACAUAAAUGCUCGUGUGUACAAGGCUUAAUGGCGAUAGCAGCAGGUACGCUCAGCGAUUGCCAUCUACAACU----GGCGGUAUGACUGCUGG
.(((((.....((((((((...((.(((((....)).))).)).))))))))......)))))..((((((...(((...)))(((((((........)----))))))....)))))). ( -39.00)
>DroEre_CAF1 12426 116 - 1
CGUUGCAAACUGCCUUGUAAUUGCCUGACAUAAAUGCUCGUGUGUACAAGGCUUAAUGGCGAUAGCAGCAGGUACGCUCAGCGAUUGCCAUCUACAACU----GGCGGUAUGACUGCUGG
.(((((.....((((((((...((.(((((....)).))).)).))))))))......)))))..((((((...(((...)))(((((((........)----))))))....)))))). ( -39.00)
>DroYak_CAF1 23542 116 - 1
CGUUGCAAACUGCCUUGUAAUUGCCUGACAUAAAUGCUCGUGUGUACAAGGCUUAAUGGCGAUAGCAGCAGGUACGCUCAGCGAUUGCCAUCUGCAACU----GGCGGCAUGACUGCUGG
.((((((....((((((((...((.(((((....)).))).)).))))))))...((((((((.(((((......)))..)).)))))))).)))))).----..(((((....))))). ( -41.30)
>consensus
CGUUGCAAACUGCCUUGUAAUUGCCUGACAUAAAUGCUCGUGUGUACAAGGCUUAAUGGCGAUAGCAGCAGGUACGCUCAGCGAUUGCCAUCUACAACU____GGCGGUAUGACUGCUGG
.((((......((((((((...((.(((((....)).))).)).))))))))...((((((((.(((((......)))..)).))))))))...)))).....(((((.....))))).. (-35.12 = -35.32 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:32 2006