Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,790,840 – 3,791,000 |
Length | 160 |
Max. P | 0.995978 |
Location | 3,790,840 – 3,790,960 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.42 |
Mean single sequence MFE | -32.88 |
Consensus MFE | -26.65 |
Energy contribution | -26.29 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.12 |
Mean z-score | -2.82 |
Structure conservation index | 0.81 |
SVM decision value | 2.64 |
SVM RNA-class probability | 0.995978 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3790840 120 + 27905053 UAAUGACAAAUAUAAGCAGGGAAACAGUGGUCAAAGUUGCCAAAGGAAAAGCGGAUUAAAUUGAUUACGGGCGAGCAUAAAAAAUGUGCAGCUUGCGCAUGUAUGCUCAAUUAAUUUGUC ....(((((((....((..(....).((((((((..(..((...........))...)..))))))))..))(((((((....((((((.....)))))).))))))).....))))))) ( -35.90) >DroSec_CAF1 20256 118 + 1 UGAUGACAAAUAUCA--AGGGAAACAGUUGUCAAAGUUGCCAGAGGAAAAGCGGAUUAAAUUGAUUACGGGUGAGCAUAAAAAAUGUGCAGCUUGCGCAUGUAUGCUCAAUUAAUUUGUC ....(((((((((((--(.(....)....(((...(((.((...))...))).)))....)))))......((((((((....((((((.....)))))).))))))))....))))))) ( -31.10) >DroSim_CAF1 24746 118 + 1 UGAUGACAAAUAUCA--AGGGAAACAGUUGUCAAAGUUGCCAGAGGAAAAGCGGAUUAAAUUGAUUACGGGCGAGCAUAAAAAAUGUGCAGCUUGCGCAUGUAUGCUCAAUUAAUUUGUU ....(((((((((((--(.(....)....(((...(((.((...))...))).)))....))))).......(((((((....((((((.....)))))).))))))).....))))))) ( -29.10) >DroEre_CAF1 10868 117 + 1 UAAUGACAAGUAUCU--AGGGAAACAGCU-CCGCAGUUGCCAAAGGAAAAGCGGAUUAAAUUGAUUACGGGCGAGCAUAAAAAAUGUGCAGCUUGCGCAUGUAUGCUCAAUUAAUUUGUC ....(((((((....--..(....).(((-((((..((.(....).))..)))((((.....))))..))))(((((((....((((((.....)))))).))))))).....))))))) ( -33.70) >DroYak_CAF1 22377 117 + 1 UUAUGACAAGAAUCA--AGGGUAACAGCU-CCGCAGUUGCCAAAGGAGAAGCGGAUUAAAUUGAUUACGGGCGAGCAUAAAAAAUGUGCAGCUUGCGCAUGUAUGCUCAAUUAAUUUGUC ....(((((((((((--(...(((....(-((((..((.(....).))..))))))))..))))))......(((((((....((((((.....)))))).)))))))......)))))) ( -34.60) >consensus UAAUGACAAAUAUCA__AGGGAAACAGUUGUCAAAGUUGCCAAAGGAAAAGCGGAUUAAAUUGAUUACGGGCGAGCAUAAAAAAUGUGCAGCUUGCGCAUGUAUGCUCAAUUAAUUUGUC ....(((((((........(....).............(((...(......................).)))(((((((....((((((.....)))))).))))))).....))))))) (-26.65 = -26.29 + -0.36)
Location | 3,790,840 – 3,790,960 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.42 |
Mean single sequence MFE | -24.68 |
Consensus MFE | -19.54 |
Energy contribution | -19.58 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.05 |
Mean z-score | -1.97 |
Structure conservation index | 0.79 |
SVM decision value | 1.05 |
SVM RNA-class probability | 0.906063 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3790840 120 - 27905053 GACAAAUUAAUUGAGCAUACAUGCGCAAGCUGCACAUUUUUUAUGCUCGCCCGUAAUCAAUUUAAUCCGCUUUUCCUUUGGCAACUUUGACCACUGUUUCCCUGCUUAUAUUUGUCAUUA (((((((....(((((((((..((....)).(((.(.....).)))......))).............(((........)))....................)))))).))))))).... ( -22.40) >DroSec_CAF1 20256 118 - 1 GACAAAUUAAUUGAGCAUACAUGCGCAAGCUGCACAUUUUUUAUGCUCACCCGUAAUCAAUUUAAUCCGCUUUUCCUCUGGCAACUUUGACAACUGUUUCCCU--UGAUAUUUGUCAUCA (((((((....((((((((.(((.((.....)).)))....))))))))......(((((........(((........)))......(((....)))....)--))))))))))).... ( -24.50) >DroSim_CAF1 24746 118 - 1 AACAAAUUAAUUGAGCAUACAUGCGCAAGCUGCACAUUUUUUAUGCUCGCCCGUAAUCAAUUUAAUCCGCUUUUCCUCUGGCAACUUUGACAACUGUUUCCCU--UGAUAUUUGUCAUCA ............(((((((.(((.((.....)).)))....)))))))....................(((........))).....((((((.((((.....--.)))).))))))... ( -22.70) >DroEre_CAF1 10868 117 - 1 GACAAAUUAAUUGAGCAUACAUGCGCAAGCUGCACAUUUUUUAUGCUCGCCCGUAAUCAAUUUAAUCCGCUUUUCCUUUGGCAACUGCGG-AGCUGUUUCCCU--AGAUACUUGUCAUUA (((((.......(((((((.(((.((.....)).)))....)))))))....(((..........(((((..((((...)).))..))))-).(((......)--)).)))))))).... ( -26.30) >DroYak_CAF1 22377 117 - 1 GACAAAUUAAUUGAGCAUACAUGCGCAAGCUGCACAUUUUUUAUGCUCGCCCGUAAUCAAUUUAAUCCGCUUCUCCUUUGGCAACUGCGG-AGCUGUUACCCU--UGAUUCUUGUCAUAA (((((.......(((((((.(((.((.....)).)))....)))))))....(.((((((........((..((((...(....)...))-))..)).....)--))))))))))).... ( -27.52) >consensus GACAAAUUAAUUGAGCAUACAUGCGCAAGCUGCACAUUUUUUAUGCUCGCCCGUAAUCAAUUUAAUCCGCUUUUCCUUUGGCAACUUUGACAACUGUUUCCCU__UGAUAUUUGUCAUCA (((((......((((((((.(((.((.....)).)))....))))))))...................(((........))).............................))))).... (-19.54 = -19.58 + 0.04)
Location | 3,790,880 – 3,791,000 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.17 |
Mean single sequence MFE | -30.10 |
Consensus MFE | -26.84 |
Energy contribution | -26.72 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.07 |
Mean z-score | -1.83 |
Structure conservation index | 0.89 |
SVM decision value | 1.70 |
SVM RNA-class probability | 0.973091 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3790880 120 + 27905053 CAAAGGAAAAGCGGAUUAAAUUGAUUACGGGCGAGCAUAAAAAAUGUGCAGCUUGCGCAUGUAUGCUCAAUUAAUUUGUCUAAAGCGGAAGAGAUCACGAUAAGAACCCACUUCAGGUUA ....................((((....(((.(((((((....((((((.....)))))).)))))))......((((((.....(....).......))))))..)))...)))).... ( -28.40) >DroSec_CAF1 20294 120 + 1 CAGAGGAAAAGCGGAUUAAAUUGAUUACGGGUGAGCAUAAAAAAUGUGCAGCUUGCGCAUGUAUGCUCAAUUAAUUUGUCUAAAGCGGAAGAGAUCACGAUAAGAACCCACUUCAGGUUA ..((((.......((((.....))))..(((((((((((....((((((.....)))))).)))))))......((((((.....(....).......)))))).)))).))))...... ( -32.10) >DroSim_CAF1 24784 120 + 1 CAGAGGAAAAGCGGAUUAAAUUGAUUACGGGCGAGCAUAAAAAAUGUGCAGCUUGCGCAUGUAUGCUCAAUUAAUUUGUUUAAAGCGGAAGAGAUCACGAUAAGAACCCACUUCAGGUUA ..((((..(((((((((((.(((....)))..(((((((....((((((.....)))))).)))))))..)))))))))))....(....)...................))))...... ( -29.40) >DroEre_CAF1 10905 120 + 1 CAAAGGAAAAGCGGAUUAAAUUGAUUACGGGCGAGCAUAAAAAAUGUGCAGCUUGCGCAUGUAUGCUCAAUUAAUUUGUCUAAAGCGGAAGAGAUCAUGAUAAGAACCCACUUCAGGUUA ....................((((....(((.(((((((....((((((.....)))))).)))))))......((((((.....(....).......))))))..)))...)))).... ( -29.10) >DroYak_CAF1 22414 120 + 1 CAAAGGAGAAGCGGAUUAAAUUGAUUACGGGCGAGCAUAAAAAAUGUGCAGCUUGCGCAUGUAUGCUCAAUUAAUUUGUCUCAAGCGGAAGAGAUCACGAUAAGAAUGCACUUCAGGUUA .......((((.(.(((..((((.........(((((((....((((((.....)))))).))))))).........(((((........)))))..))))...))).).))))...... ( -31.50) >consensus CAAAGGAAAAGCGGAUUAAAUUGAUUACGGGCGAGCAUAAAAAAUGUGCAGCUUGCGCAUGUAUGCUCAAUUAAUUUGUCUAAAGCGGAAGAGAUCACGAUAAGAACCCACUUCAGGUUA ....................((((....(((.(((((((....((((((.....)))))).)))))))......((((((.....(....).......))))))..)))...)))).... (-26.84 = -26.72 + -0.12)
Location | 3,790,880 – 3,791,000 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.17 |
Mean single sequence MFE | -24.64 |
Consensus MFE | -22.90 |
Energy contribution | -22.82 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.12 |
Mean z-score | -1.40 |
Structure conservation index | 0.93 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.872552 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3790880 120 - 27905053 UAACCUGAAGUGGGUUCUUAUCGUGAUCUCUUCCGCUUUAGACAAAUUAAUUGAGCAUACAUGCGCAAGCUGCACAUUUUUUAUGCUCGCCCGUAAUCAAUUUAAUCCGCUUUUCCUUUG ....((((((((((.((.......)).....))))))))))...........(((((((.(((.((.....)).)))....)))))))((...(((.....)))....)).......... ( -24.90) >DroSec_CAF1 20294 120 - 1 UAACCUGAAGUGGGUUCUUAUCGUGAUCUCUUCCGCUUUAGACAAAUUAAUUGAGCAUACAUGCGCAAGCUGCACAUUUUUUAUGCUCACCCGUAAUCAAUUUAAUCCGCUUUUCCUCUG ....((((((((((.((.......)).....))))))))))..........((((((((.(((.((.....)).)))....))))))))............................... ( -25.20) >DroSim_CAF1 24784 120 - 1 UAACCUGAAGUGGGUUCUUAUCGUGAUCUCUUCCGCUUUAAACAAAUUAAUUGAGCAUACAUGCGCAAGCUGCACAUUUUUUAUGCUCGCCCGUAAUCAAUUUAAUCCGCUUUUCCUCUG ......((((((((((.(((..(((........)))..)))...........(((((((.(((.((.....)).)))....)))))))...............))))))))))....... ( -24.30) >DroEre_CAF1 10905 120 - 1 UAACCUGAAGUGGGUUCUUAUCAUGAUCUCUUCCGCUUUAGACAAAUUAAUUGAGCAUACAUGCGCAAGCUGCACAUUUUUUAUGCUCGCCCGUAAUCAAUUUAAUCCGCUUUUCCUUUG ....((((((((((.((.......)).....))))))))))...........(((((((.(((.((.....)).)))....)))))))((...(((.....)))....)).......... ( -24.90) >DroYak_CAF1 22414 120 - 1 UAACCUGAAGUGCAUUCUUAUCGUGAUCUCUUCCGCUUGAGACAAAUUAAUUGAGCAUACAUGCGCAAGCUGCACAUUUUUUAUGCUCGCCCGUAAUCAAUUUAAUCCGCUUCUCCUUUG ......((((((...(((((.((.((.....))))..)))))..........(((((((.(((.((.....)).)))....)))))))...................))))))....... ( -23.90) >consensus UAACCUGAAGUGGGUUCUUAUCGUGAUCUCUUCCGCUUUAGACAAAUUAAUUGAGCAUACAUGCGCAAGCUGCACAUUUUUUAUGCUCGCCCGUAAUCAAUUUAAUCCGCUUUUCCUUUG ......((((((((((......(((........)))...............((((((((.(((.((.....)).)))....))))))))..............))))))))))....... (-22.90 = -22.82 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:31 2006