Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,790,611 – 3,790,770 |
Length | 159 |
Max. P | 0.998742 |
Location | 3,790,611 – 3,790,730 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.32 |
Mean single sequence MFE | -27.58 |
Consensus MFE | -26.21 |
Energy contribution | -26.17 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -1.07 |
Structure conservation index | 0.95 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.599912 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3790611 119 + 27905053 CGUGCUAGCACCAGAUACCCGCCCCCU-UCUUCCACCGCCUCCCGCUGGCCACGGCAAAAUGUUGUUAUUUUGCCUGUGUGUUUAAAAACUGCACAAGAUUGCUUAUCUUGCAUGUCGCC .((((.......((((((.(.......-.........(((.......)))...(((((((((....))))))))).).)))))).......))))..((((((.......))).)))... ( -28.54) >DroSec_CAF1 20021 120 + 1 CGUGCUAGCACCAUAUACCCGCCCCCUUUCUUCCACCGCCUCCCGCUGGCCACGGCAAAAUGUUGUUAUUUUGCCUGUGUGUUUAAAAACUGCACAAGAUUGCUUAUCUUGCACGUCGCC (((((..(((...........................(((.......)))((((((((((((....))))))))).)))...........)))..(((((.....))))))))))..... ( -29.20) >DroSim_CAF1 24511 120 + 1 CGUGCUAGCACCAGAUACCCGCCCCCUUUCUUCCACCGCCUCCCGCUGGCCACGGCAAAAUGUUGUUAUUUUGCCUGUGUGUUUAAAAACUGCACAAGAUUGCUUAUCUUGCAUGUCGCC .((((.......((((((.(.................(((.......)))...(((((((((....))))))))).).)))))).......))))..((((((.......))).)))... ( -28.54) >DroEre_CAF1 10635 119 + 1 CGUGCUAGCACCAGAUACCCGCCCCU-UUCUUCCCCCGCCUCCCGCUAGCCACGGCAAAAUGUUGUUAUUUUGCCUCUGUGUUUAAAAACUGCACAAGAUUGCUUAUCUUGCAUGUCGCC .((((((((....(.....)((....-..........)).....))))).)))(((((((((....)))))))))..(((((.........))))).((((((.......))).)))... ( -26.94) >DroYak_CAF1 22141 117 + 1 CGUGCUAGCCCCAGAUAGCCGCCCCU---AUUCCCCCGCCUCCUGCUAGCCACGGCAAAAAGUUGUUAUUUUGCCUCUGUGUUUAAAAACUGCACAAGAUUGCUUAUCUUGCAUGUCGCC .((((((((....(((((......))---)))............))))).)))(((((((........)))))))..(((((.........))))).((((((.......))).)))... ( -24.69) >consensus CGUGCUAGCACCAGAUACCCGCCCCCUUUCUUCCACCGCCUCCCGCUGGCCACGGCAAAAUGUUGUUAUUUUGCCUGUGUGUUUAAAAACUGCACAAGAUUGCUUAUCUUGCAUGUCGCC .((((((((...................................))))).)))(((((((((....)))))))))..(((((.........))))).((((((.......))).)))... (-26.21 = -26.17 + -0.04)
Location | 3,790,650 – 3,790,770 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.83 |
Mean single sequence MFE | -33.28 |
Consensus MFE | -29.66 |
Energy contribution | -30.18 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.06 |
Mean z-score | -2.29 |
Structure conservation index | 0.89 |
SVM decision value | 3.21 |
SVM RNA-class probability | 0.998742 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3790650 120 - 27905053 AAUUAUUUCUCUGCGGGUCUCUCAGCUCAUACAAAUUAGAGGCGACAUGCAAGAUAAGCAAUCUUGUGCAGUUUUUAAACACACAGGCAAAAUAACAACAUUUUGCCGUGGCCAGCGGGA .........(((((((((......))))............(((.((..(((((((.....)))))))..................((((((((......)))))))))).))).))))). ( -34.00) >DroSec_CAF1 20061 120 - 1 AAUUAUUUCUCUGCGGGUCUCUCAGCUCAUACAAAUUAGAGGCGACGUGCAAGAUAAGCAAUCUUGUGCAGUUUUUAAACACACAGGCAAAAUAACAACAUUUUGCCGUGGCCAGCGGGA .........(((((((((......))))............(((.(((..((((((.....))))))..)................((((((((......)))))))))).))).))))). ( -38.00) >DroSim_CAF1 24551 120 - 1 AAUUAUUUCUCUGCGGGUCUCUCAGCUCAUACAAAUUAGAGGCGACAUGCAAGAUAAGCAAUCUUGUGCAGUUUUUAAACACACAGGCAAAAUAACAACAUUUUGCCGUGGCCAGCGGGA .........(((((((((......))))............(((.((..(((((((.....)))))))..................((((((((......)))))))))).))).))))). ( -34.00) >DroEre_CAF1 10674 120 - 1 AAUUAUUUCUCUCCACGUCUCUCAGCACAUACAAAUUAGAGGCGACAUGCAAGAUAAGCAAUCUUGUGCAGUUUUUAAACACAGAGGCAAAAUAACAACAUUUUGCCGUGGCUAGCGGGA ...........(((.((.((...(((.(((.....((((((((..(..(((((((.....))))))))..)))))))).......((((((((......))))))))))))))))))))) ( -29.90) >DroYak_CAF1 22178 119 - 1 AAUUAG-UCUCUCCAGGUCGCUCGGCACAUACAAAUUAGAGGCGACAUGCAAGAUAAGCAAUCUUGUGCAGUUUUUAAACACAGAGGCAAAAUAACAACUUUUUGCCGUGGCUAGCAGGA ......-............(((.(.(((.......((((((((..(..(((((((.....))))))))..)))))))).......(((((((........)))))))))).).))).... ( -30.50) >consensus AAUUAUUUCUCUGCGGGUCUCUCAGCUCAUACAAAUUAGAGGCGACAUGCAAGAUAAGCAAUCUUGUGCAGUUUUUAAACACACAGGCAAAAUAACAACAUUUUGCCGUGGCCAGCGGGA .........(((((.((((.(..............((((((((..(..(((((((.....))))))))..)))))))).......((((((((......))))))))).)))).))))). (-29.66 = -30.18 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:27 2006