Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,788,585 – 3,788,705 |
Length | 120 |
Max. P | 0.814544 |
Location | 3,788,585 – 3,788,705 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.31 |
Mean single sequence MFE | -44.65 |
Consensus MFE | -31.46 |
Energy contribution | -31.90 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.09 |
Mean z-score | -2.04 |
Structure conservation index | 0.70 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.814544 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3788585 120 + 27905053 AUUGGUGCCCGGCCCGCGGAUGUGCGAUGGUGUGUGUGUGCGCCAGUUGGCUGGUGUUUGUGCGAUGUUUGCCUGUGUUUGCGUGGAAGCGGGCACCGCCAACGAAACGGAACCGAAAAU .(((((..(((((.((((.(((..(....)..))).)))).))).((((((.(((((((((.(.((((..((....))..)))).)..))))))))))))))).....)).))))).... ( -50.40) >DroSec_CAF1 17911 105 + 1 AUUGGU-----------GGAUGUGCGA--GUGUGUGUGUGCGCCAGUUGGCUGGUGUGUGCGAGAUGUUUGCCUGUGUUUGCGUGGAAGC--GCACCGCCAACGAAACGGAACCGAAAAU .(((((-----------((....((((--(..(.((((..((((((....))))))..))))..)..))))).......(((((....))--)))))))))).....((....))..... ( -40.30) >DroSim_CAF1 22311 105 + 1 AUUGGU-----------GGAUGUGCGA--GUGUGUGUGUGCACCAGUUCGCUGGUGUGUGCG--AUGUUUGCCUGUGUUUGCGUGGAAGCGGGCACCGCCAACGAAACGGAACCGAAAAU .(((((-----------((....((((--(..(.((((..((((((....))))))..))))--)..)))))...(((((((......)))))))))))))).....((....))..... ( -42.10) >DroEre_CAF1 8493 114 + 1 AUUGGUGCCCGGACCGCGGAUGUGCGA--GUGU--GUGUGGGCCAGUAGGUUGGUGUGUGCG--AUGUUUGCCUGUGUUUGCGUGGCAGCGGGCACCGCCAACGAAACGGAACCGAAAAU .(((((..((((.(((((.(..(....--)..)--.))))).)).....(((((((.((((.--.((((.((((((....))).))))))).))))))))))).....)).))))).... ( -45.80) >consensus AUUGGU___________GGAUGUGCGA__GUGUGUGUGUGCGCCAGUUGGCUGGUGUGUGCG__AUGUUUGCCUGUGUUUGCGUGGAAGCGGGCACCGCCAACGAAACGGAACCGAAAAU .(((((...........((.((((((..........)))))))).((((((.(((((.(((...((((..((....))..))))....))).)))))))))))........))))).... (-31.46 = -31.90 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:25 2006