Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,785,587 – 3,785,691 |
Length | 104 |
Max. P | 0.804351 |
Location | 3,785,587 – 3,785,691 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 93.91 |
Mean single sequence MFE | -45.95 |
Consensus MFE | -41.94 |
Energy contribution | -42.38 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.11 |
Mean z-score | -1.67 |
Structure conservation index | 0.91 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.804351 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3785587 104 - 27905053 AGGGGGCAGCUCGGGUGGCGGGGCAGGAGGUGGUAGGUCAUCGGGAACAUCGGUGAUCACUAGCGCCGAUCACCACAUGACCACGGUGCCUACGCCCGCCCAAU ...((((.((((.(....).))))....((..(((((.(((((((..(((.(((((((.........)))))))..))).)).))))))))))..))))))... ( -45.00) >DroSec_CAF1 14949 104 - 1 AGGGGGCAGCUCUGGUGGCGGAGCAGGAGGCGGUAGGUCAUCGGGAACAUCGGUGAUCACUAGCGCCGAUCACCACAUGACCACGGUGCCUACGCCCGCCCAAU ...((((.((((((....))))))..(.((((.((((.(((((((..(((.(((((((.........)))))))..))).)).))))))))))))))))))... ( -49.80) >DroSim_CAF1 18700 104 - 1 AGGGGGCAGCUCUGGUGGCGGAGCAGGAGGCGGUAGGUCAUCGGGAACAUCGGUGAUCACUAGCGCCGAUCACCACAUGACCACGGUGCCUACGCCCGCCCAAU ...((((.((((((....))))))..(.((((.((((.(((((((..(((.(((((((.........)))))))..))).)).))))))))))))))))))... ( -49.80) >DroEre_CAF1 5614 104 - 1 AGGGGGCAGUUCGGGAGGCGGAGCAGCAGGUGGUAGGUCCUCGGGGACAUCGGUGAUCACUACCGCCGAACAUCACAUGACCACGGUGCCUACGCCCGCACAAU .(.((((.((((.(....).)))).(((.(((((..((((....)))).((((((........))))))..........)))))..)))....)))).)..... ( -39.20) >consensus AGGGGGCAGCUCGGGUGGCGGAGCAGGAGGCGGUAGGUCAUCGGGAACAUCGGUGAUCACUAGCGCCGAUCACCACAUGACCACGGUGCCUACGCCCGCCCAAU ...((((.((((((....))))))....((((.((((.(((((((..(((.(((((((.........)))))))..))).)).))))))))))))).))))... (-41.94 = -42.38 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:18 2006