Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 696,813 – 696,904 |
Length | 91 |
Max. P | 0.994220 |
Location | 696,813 – 696,904 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 82.78 |
Mean single sequence MFE | -33.73 |
Consensus MFE | -28.99 |
Energy contribution | -28.77 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.05 |
Mean z-score | -3.28 |
Structure conservation index | 0.86 |
SVM decision value | 2.46 |
SVM RNA-class probability | 0.994220 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 696813 91 - 27905053 CGGCUUUUGCUGACAGG---AGAGGUUGGUAGAGGCGGCAGAGGCGGCAGAGGCGGCAGAGGCGGCAGAGGCCGUAGAAAGCCGCAACAGGCAG ..((((((((..((...---....))..))))))))(((....(((((....((.((....)).))....))))).....)))((.....)).. ( -37.30) >DroSec_CAF1 116222 76 - 1 CGGCUUUUGCUGACAGGAGGAGAGGUUGGCAGAGGCGGU------------------AGAGGCGGCAGAGGCCGUAGAAAGCCGCAACAGGCAG (.((((((((..((..........))..)))))))).).------------------....(((((....))))).....(((......))).. ( -29.50) >DroSim_CAF1 118386 85 - 1 CGGCUUUUGCUGACAGGAGGAGAGGUUGGCAGAGGCGGUAGA---------GGCGGUAGAGGCGGCAGAGGCCGUAGAAAGCCGCAACAGGCAG ..((((((((..((..........))..)))))))).((...---------.(((((....(((((....))))).....))))).....)).. ( -34.40) >consensus CGGCUUUUGCUGACAGGAGGAGAGGUUGGCAGAGGCGGUAGA_________GGCGG_AGAGGCGGCAGAGGCCGUAGAAAGCCGCAACAGGCAG (.((((((((..((..........))..)))))))).).......................(((((....))))).....(((......))).. (-28.99 = -28.77 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:54 2006