Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,781,744 – 3,781,848 |
Length | 104 |
Max. P | 0.998951 |
Location | 3,781,744 – 3,781,848 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.87 |
Mean single sequence MFE | -29.80 |
Consensus MFE | -26.90 |
Energy contribution | -26.46 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.11 |
Mean z-score | -2.36 |
Structure conservation index | 0.90 |
SVM decision value | 3.30 |
SVM RNA-class probability | 0.998951 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3781744 104 - 27905053 UUUCGCGGAC--UCAUACAUUCUGGCCGAUUUUGUUUUCGAUUUCGUUUCAAAUGGCUCGUUUGCCGGCUUCCAGCUGG-----AGAGCGUAGUUUGCAUUUUAUUA---------UUUC ....((((((--((...((((.(((.(((..(((....)))..)))..)))))))((((.....(((((.....)))))-----.))))).))))))).........---------.... ( -29.40) >DroSec_CAF1 11224 111 - 1 UUUCGCGGACAUACAUACAUUCUGGCCGAUUUUGUUUUCGAUUUCGUUUCAAAUGGCUCGUUUGCCGGCUUCCAGCUGGAGUGGAGAGCGUAGUUUGCAUUUUAUUA---------UUUC ....((((((.(((...((((.(((.(((..(((....)))..)))..)))))))((((.....(((((.....)))))......))))))))))))).........---------.... ( -31.40) >DroSim_CAF1 14893 111 - 1 UUUCGCGAACAUACAUACAUUCUGGCCGAUUUUGUUUUCGAUUUCGUUUCAAAUGGCUCGUUUGCCGGCUUCCAGCUGGAGUGGAGAGCGUAGUUUGCAUUUUAUUA---------UUUC ....((((((.(((...((((.(((.(((..(((....)))..)))..)))))))((((.....(((((.....)))))......))))))))))))).........---------.... ( -31.80) >DroEre_CAF1 1561 104 - 1 UUUUGCGGGC--UCAUACAUUCUGGCCGAUUUUGUUUUCGAUUUCGUUUCAAAUGGCUCGUUUGCCGGCUUCCAGCUGG-----AGAGCGUAGUUUGCAUUUUAUUA---------UUUC ...(((((((--((...((((.(((.(((..(((....)))..)))..)))))))((((.....(((((.....)))))-----.))))).))))))))........---------.... ( -29.30) >DroYak_CAF1 14831 113 - 1 UUUUGCGAGC--UCAUACAUUCUGGUCGAUUUUGUUUUCGAUUUCGUUUCAAAUGGAUCGUUUGCCGGUUUCCAGCUGG-----AGAGCGUAGUUUGCAUUUUAUUAUUUUUGUUAUUUC ...(((((((--(....((((.(((.(((..(((....)))..)))..)))))))...((((..(((((.....)))))-----..)))).))))))))..................... ( -27.10) >consensus UUUCGCGGAC__UCAUACAUUCUGGCCGAUUUUGUUUUCGAUUUCGUUUCAAAUGGCUCGUUUGCCGGCUUCCAGCUGG_____AGAGCGUAGUUUGCAUUUUAUUA_________UUUC ....((((((.......((((.(((.(((..(((....)))..)))..)))))))((((.....(((((.....)))))......))))...))))))...................... (-26.90 = -26.46 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:08 2006