Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,780,108 – 3,780,228 |
Length | 120 |
Max. P | 0.980013 |
Location | 3,780,108 – 3,780,228 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.91 |
Mean single sequence MFE | -38.09 |
Consensus MFE | -31.18 |
Energy contribution | -32.78 |
Covariance contribution | 1.60 |
Combinations/Pair | 1.12 |
Mean z-score | -2.24 |
Structure conservation index | 0.82 |
SVM decision value | 1.85 |
SVM RNA-class probability | 0.980013 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3780108 120 + 27905053 CCUUUGGGCAGAUGCCUGCCAUAAAUCUGCAAGUGCUUUGCUCUGCCCAUUCCCAAAUUCCAGUUCGUUUCGAAUGCGCUCACUUCGCGCACUUGCAGUCGUAUUGUAUUUGCCGCAGGG .((((((((((((((.....(((...((((((((((........((.(((((..((((........)))).))))).)).........))))))))))...))).))))))))).))))) ( -38.53) >DroSec_CAF1 9626 120 + 1 CCUUUGGGCAGAUGCCUGCCAUAAAUCUGCAAGUGCUUUGCUCUGCCCAUUCCCAAAUUCCAGUUCGUUUCGAAUGUACUCACUUCGCGCACUUGCAGUCGUAUUGUAUCUGCCGCAGGG .((((((((((((((.....(((...((((((((((........(..(((((..((((........)))).)))))..).........))))))))))...))).))))))))).))))) ( -38.23) >DroSim_CAF1 13303 115 + 1 CCUUUGGGCAGAUGCCUGCCAUAAAUCUGCAAGUGCUUUGCUCUGCCCAUUCCCAAAUUCCAGUUCGUUUCGAAUGCACU-----CGCGCACUUGCAGUCGUAUUGUAUCUGCCGCAGGG .((((((((((((((.....(((...((((((((((..........................(((((...)))))((...-----.))))))))))))...))).))))))))).))))) ( -40.00) >DroEre_CAF1 2 112 + 1 ----UGGGCAGAUGCCUGCCAUAAAUCUGGAAGUGCUUUGCUCUGCCCGUUCCCAAAUUCGAGUUCGUUUCGAAUGCACUCAUUUCGCGCACUUG---UGGUAU-AAAUCUGCCUCGGGG ----.(((((((.((((.(((......))).)).)).....)))))))...(((.....(((((.(((...(((((....))))).))).)))))---.((((.-.....))))..))). ( -34.50) >DroYak_CAF1 13246 119 + 1 CCUUUGGGCAGAUGCCUGCCAUAAAUCUGCAAGUGCUUUGCUCUGCCCGUUCCUAAAUUCGAGUUCGCUUCAAACGUACUCAGUUCGCGCACUUGCAGUCGUAU-AAAUCUGCCUCGGGG (((..((((((((...(((.......((((((((((...((...))..............((((.((.......)).)))).......))))))))))..))).-..))))))))..))) ( -39.20) >consensus CCUUUGGGCAGAUGCCUGCCAUAAAUCUGCAAGUGCUUUGCUCUGCCCAUUCCCAAAUUCCAGUUCGUUUCGAAUGCACUCACUUCGCGCACUUGCAGUCGUAUUGUAUCUGCCGCAGGG .((((((((((((((.....(((...((((((((((..........................(((((...)))))((.........))))))))))))...))).))))))))).))))) (-31.18 = -32.78 + 1.60)
Location | 3,780,108 – 3,780,228 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.91 |
Mean single sequence MFE | -37.58 |
Consensus MFE | -29.49 |
Energy contribution | -30.33 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.10 |
Mean z-score | -1.68 |
Structure conservation index | 0.78 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.747449 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3780108 120 - 27905053 CCCUGCGGCAAAUACAAUACGACUGCAAGUGCGCGAAGUGAGCGCAUUCGAAACGAACUGGAAUUUGGGAAUGGGCAGAGCAAAGCACUUGCAGAUUUAUGGCAGGCAUCUGCCCAAAGG .(((..................((((((((((.....((..((.(((((....((((......)))).))))).))...))...))))))))))......(((((....)))))...))) ( -37.00) >DroSec_CAF1 9626 120 - 1 CCCUGCGGCAGAUACAAUACGACUGCAAGUGCGCGAAGUGAGUACAUUCGAAACGAACUGGAAUUUGGGAAUGGGCAGAGCAAAGCACUUGCAGAUUUAUGGCAGGCAUCUGCCCAAAGG .(((..(((((((.(.(((...((((((((((.....((..(..(((((....((((......)))).)))))..)...))...))))))))))...))).....).)))))))...))) ( -37.60) >DroSim_CAF1 13303 115 - 1 CCCUGCGGCAGAUACAAUACGACUGCAAGUGCGCG-----AGUGCAUUCGAAACGAACUGGAAUUUGGGAAUGGGCAGAGCAAAGCACUUGCAGAUUUAUGGCAGGCAUCUGCCCAAAGG .(((..(((((((.(.(((...((((((((((((.-----.((.(((((....((((......)))).))))).))...))...))))))))))...))).....).)))))))...))) ( -39.80) >DroEre_CAF1 2 112 - 1 CCCCGAGGCAGAUUU-AUACCA---CAAGUGCGCGAAAUGAGUGCAUUCGAAACGAACUCGAAUUUGGGAACGGGCAGAGCAAAGCACUUCCAGAUUUAUGGCAGGCAUCUGCCCA---- .((((((........-......---...((((((.......))))))((((.......)))).))))))...(((((((.....((.((.(((......))).)))).))))))).---- ( -36.60) >DroYak_CAF1 13246 119 - 1 CCCCGAGGCAGAUUU-AUACGACUGCAAGUGCGCGAACUGAGUACGUUUGAAGCGAACUCGAAUUUAGGAACGGGCAGAGCAAAGCACUUGCAGAUUUAUGGCAGGCAUCUGCCCAAAGG ..((..(((((((((-(((...((((((((((..(..(((....(((((((..((....))..))...)))))..)))..)...))))))))))...))))).....)))))))....)) ( -36.90) >consensus CCCUGCGGCAGAUACAAUACGACUGCAAGUGCGCGAAGUGAGUGCAUUCGAAACGAACUGGAAUUUGGGAAUGGGCAGAGCAAAGCACUUGCAGAUUUAUGGCAGGCAUCUGCCCAAAGG ....(.(((((((.........((((((((((.........((.(((((....((((......)))).))))).))........)))))))))).......(....)))))))))..... (-29.49 = -30.33 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:05 2006