Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,778,578 – 3,778,680 |
Length | 102 |
Max. P | 0.574723 |
Location | 3,778,578 – 3,778,680 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.45 |
Mean single sequence MFE | -19.74 |
Consensus MFE | -15.24 |
Energy contribution | -15.55 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.04 |
Mean z-score | -1.48 |
Structure conservation index | 0.77 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.574723 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3778578 102 - 27905053 ------------------CACUAACUAAUCUUAAUUAGAAGACUCCAGCCAACUGAUGGAGGACCAGCCCCCUUCAUUAGUAUGCAUUGUUCUCAGCCACUUUGCACAUCAGGAAAAAAA ------------------......(((((....))))).....(((.....(((((((((((........))))))))))).((((..((........))..)))).....)))...... ( -23.90) >DroSec_CAF1 8112 100 - 1 ------------------CACUAACUAAUCUUAAUUAGAAGACUCCGACCAACUGAUUGAGGACCCGCCCCCUUCAUUAGUAUGCAUUGUUCUCAGCCACUUUACACAUCAGGGAA--AA ------------------..........((((((((((..(........)..)))))))))).(((((...((.....))...)).(((....)))...............)))..--.. ( -13.40) >DroSim_CAF1 11785 100 - 1 ------------------CACUAACUAAUCUUAAUUAGAAGACUCCGGCCAACUGAUUGAGCACCAGCCCCCUUCAUUAGUAUGCAUUGUUCUCAGCCACUUUGCACAUCUGGAAA--AA ------------------......(((((....))))).....(((((...((((((.(((..........))).)))))).((((..((........))..))))...)))))..--.. ( -15.70) >DroYak_CAF1 9869 117 - 1 UAAAUUCCAAAUGCACUUCACUAACUAAUCUUAAUUAGAAGUCUCCAGCCAACUGAUUGAGGACCUGCC-CCUUCAUUAGUAUGCAUUGUUCUCAGUCACUUUGCACAUCAGGAAA--AA ....((((..(((.(((((..................))))).....((.((.(((((((((((.(((.-.((.....))...)))..))))))))))).)).)).)))..)))).--.. ( -25.97) >consensus __________________CACUAACUAAUCUUAAUUAGAAGACUCCAGCCAACUGAUUGAGGACCAGCCCCCUUCAUUAGUAUGCAUUGUUCUCAGCCACUUUGCACAUCAGGAAA__AA ........................(((((....))))).....(((.....((((((.((((........)))).)))))).((((..((........))..)))).....)))...... (-15.24 = -15.55 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:03 2006