Locus 1263

Sequence ID 3R_DroMel_CAF1
Location 3,778,299 – 3,778,419
Length 120
Max. P 0.633749
window2062

overview

Window 2

Location 3,778,299 – 3,778,419
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 94.58
Mean single sequence MFE -40.26
Consensus MFE -36.96
Energy contribution -37.65
Covariance contribution 0.69
Combinations/Pair 1.05
Mean z-score -1.49
Structure conservation index 0.92
SVM decision value 0.21
SVM RNA-class probability 0.633749
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3778299 120 - 27905053
UAUGAUCAUGGGAGGCGCACACCUUUGUUUGGUCAUGUUCCUGGUCAUCUUAUCUCGGAACGUCCCCGGUAUCGGCAAGUAUCUGCAUGUGCAUCUGCAUCUGCAGCGCCGCCCAAGGCU
.....((.((((.(((((............((..(((((((.((.........)).)))))))..))(((((......)))))((((.((((....)))).))))))))).)))).)).. ( -42.00)
>DroSec_CAF1 7856 120 - 1
UAUGAUCAUGGGAGGCGCACACCUUUGUUUGGUCAUGUUCCUGGUCAUCUUAUCUCGGAACGUCCCCGGUAUCGGCAAGUAUCUGCAUGUGCAUCUGCAUCUGCAGCGCCGCCCAAGGCU
.....((.((((.(((((............((..(((((((.((.........)).)))))))..))(((((......)))))((((.((((....)))).))))))))).)))).)).. ( -42.00)
>DroSim_CAF1 11529 120 - 1
UAUGAUCAUGGGAGGCGCACACCUUUGUUUGGUCAUGUUCCUGGUCAUCUUAUCUCGGAACGUCCCCGGUAUCGGCAAGUAUCUGCAUGUGCAUCUGCAUCUGCAGCGCCGCCCAAGGCU
.....((.((((.(((((............((..(((((((.((.........)).)))))))..))(((((......)))))((((.((((....)))).))))))))).)))).)).. ( -42.00)
>DroYak_CAF1 9599 117 - 1
UAUGAUCAUAGGAGGCGCACACCUUUGUUUGCUCAUGUUCCUGGUCAUCUUAUCUCGGAGCGUCUCGGG-AU--GCAAGUAUCUGCAUCUGCAUCUGCAUUUCCAGCGCCGCCUUAGGCU
.........(((.(((((.......(((.(((..(((((((.((.........)).)))))))....((-((--(((......))))))))))...)))......))))).)))...... ( -35.02)
>consensus
UAUGAUCAUGGGAGGCGCACACCUUUGUUUGGUCAUGUUCCUGGUCAUCUUAUCUCGGAACGUCCCCGGUAUCGGCAAGUAUCUGCAUGUGCAUCUGCAUCUGCAGCGCCGCCCAAGGCU
.....((.((((.(((((.....(((((((((..(((((((.((.........)).)))))))..)))).....)))))....((((.((((....)))).))))))))).)))).)).. (-36.96 = -37.65 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:02 2006