Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,774,332 – 3,774,444 |
Length | 112 |
Max. P | 0.500000 |
Location | 3,774,332 – 3,774,444 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.87 |
Mean single sequence MFE | -29.46 |
Consensus MFE | -24.85 |
Energy contribution | -24.91 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.14 |
Mean z-score | -1.35 |
Structure conservation index | 0.84 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3774332 112 + 27905053 UCAUUAAAAUCCAUGACCGCGCUCGUAAAUUUCGAGCGCAAUACUCUGUGGGGCGGCGAAAUUGAAAUUA--------CAAAAUAAAUCGCACCGACUUUAUAGUGUCUGGCAGUGUCUU ...........(((..(((((((((.......)))))))...((.(((((((((((.(..(((.......--------.......)))..).))).)))))))).))..))..))).... ( -30.54) >DroSec_CAF1 3856 119 + 1 UCAUUAAAAUCCAUGACCGCGCUCGUAAAUUUCGAGCGCA-UACACUGUGGGGUGGCGAAAUUGAAAUUACAAAAUUACAAAAUAAAUCGCACCGAGUUUAUAGUGUCUGGCAGUGUCUU ...........(((..(((((((((.......))))))).-.(((((((((((((.(((..(((.((((....)))).)))......)))))))....)))))))))..))..))).... ( -31.90) >DroSim_CAF1 7500 120 + 1 UCAUUAAAAUCCAUGACCGCGCUCGUAAAUUUCGAGCGUACUACUCUGUGGGGCGGCGAAAUUGAAAUUACAAAAUUACAAAAUAAAUCGCACCGAGUUUAUAGUGUCUGGCAGUGUCUU ..............(((.(((((((.......)))))))......((((.(((((.(....(((.((((....)))).))).((((((((...))).))))).)))))).)))).))).. ( -26.00) >DroYak_CAF1 5560 112 + 1 UCAUUAAAAUCCAUGACCGCGAUCGUAAAUUUCGAGCGCAAUACUCUGUGGGGCGGCGAAAUUCAAAUUA--------CAAAAUAAUUCGCGCCGACUUUAUAGUGUCUGGCAGAGUCUU ((((........))))..(((.(((.......))).)))...(((((((.((((((((.......(((((--------.....)))))..)))).(((....))))))).)))))))... ( -29.40) >consensus UCAUUAAAAUCCAUGACCGCGCUCGUAAAUUUCGAGCGCAAUACUCUGUGGGGCGGCGAAAUUGAAAUUA________CAAAAUAAAUCGCACCGACUUUAUAGUGUCUGGCAGUGUCUU ((((........))))..(((((((.......)))))))...(((((((.((((.((((............................))))((..........)))))).)))))))... (-24.85 = -24.91 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:52 2006