Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,773,082 – 3,773,197 |
Length | 115 |
Max. P | 0.512349 |
Location | 3,773,082 – 3,773,197 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.82 |
Mean single sequence MFE | -32.35 |
Consensus MFE | -21.49 |
Energy contribution | -23.68 |
Covariance contribution | 2.19 |
Combinations/Pair | 1.00 |
Mean z-score | -1.57 |
Structure conservation index | 0.66 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.512349 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3773082 115 + 27905053 AACAAUCAAGAGCAACUCGAGAGCGCC-CGACUGCAGUUC----GCCCAUCGCCAACGAGAGCGCCAGAAAUGCAUCGAGAGUGCAUUUGUUUGCGAUUACGCCAACAAAUUGCUGACAC ..........(((((.......(((((-(((.((((.(((----(((..(((....)))..).))..))).))))))).).)))).((((((.(((....))).)))))))))))..... ( -31.60) >DroSec_CAF1 2596 120 + 1 AACAAUCAAGAGCAACUCGAGAGCGAACGGACUGCAGUUCGGACGCCCAACGCCAUCGAGAGCGCCAGAAAUGCAUCGGGAGUGCAUUUGUUUGCGAUUACGCCAACAAAUUGCUUACAC .........(((((((((((..(((...((((....))))((....))..)))..))))).(((((.((......))..).)))).((((((.(((....))).)))))))))))).... ( -36.10) >DroSim_CAF1 6240 120 + 1 AACAAUCAAGAGCAACUCGAGAGCGAACGGACUGCAGUUCGGAGGCCCAACGCCAUCGAGAGCGCCAGAAAUGCAUCGGGAGUGCAUUUGUUUGCGAUUACGCCAACAAAUUGCUUACAC .........(((((((((((..(((...((((....))))((....))..)))..))))).(((((.((......))..).)))).((((((.(((....))).)))))))))))).... ( -36.10) >DroYak_CAF1 4574 87 + 1 AACAAUUAAGAGCAACUCGAGAGA---------------------------------GAGAGCGCGAGAAAUGCAUCGGGAGUGCAUUUGUUUGCGAUUACGCCAACAAAUUGCUUACAC .........(((((((((....))---------------------------------)....(((((((((((((.(....)))))))).))))))..............)))))).... ( -25.60) >consensus AACAAUCAAGAGCAACUCGAGAGCGAA_GGACUGCAGUUC____GCCCAACGCCAUCGAGAGCGCCAGAAAUGCAUCGGGAGUGCAUUUGUUUGCGAUUACGCCAACAAAUUGCUUACAC .........(((((((((((..(((..(((((....))))).........)))..)))))........(((((((.(....))))))))(((.(((....))).)))...)))))).... (-21.49 = -23.68 + 2.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:51 2006