Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,772,463 – 3,772,582 |
Length | 119 |
Max. P | 0.939525 |
Location | 3,772,463 – 3,772,582 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 98.88 |
Mean single sequence MFE | -22.80 |
Consensus MFE | -22.80 |
Energy contribution | -22.80 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.16 |
Structure conservation index | 1.00 |
SVM decision value | 1.30 |
SVM RNA-class probability | 0.939525 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3772463 119 - 27905053 AUAAUUCAAUAUAUUUAUUUUAAUGGCUUACAUGCAAAUUGUGCACUUUGUUCAAUUCUUUCGUUAAUUGCUAAAUGCAACUGGCUGGCCAAAGCUAUUAAAAUUGAAAAAAAAAAAAU ....((((((........(((((((((((....((.(((((.((.....)).))))).....((((.((((.....)))).))))..))..)))))))))))))))))........... ( -22.80) >DroSec_CAF1 1977 118 - 1 AUAAUUCAAUAUAUUUAUUUUAAUGGCUUACAUGCAAAUUGUGCACUUUGUUCAAUUCUUUCGUUAAUUGCUAAAUGCAACUGGCUGGCCAAAGCUAUUAAAAUUGAAAAAAAAAACA- ....((((((........(((((((((((....((.(((((.((.....)).))))).....((((.((((.....)))).))))..))..)))))))))))))))))..........- ( -22.80) >DroSim_CAF1 5629 118 - 1 AUAAUUCAAUAUAUUUAUUUUAAUGGCUUACAUGCAAAUUGUGCACUUUGUUCAAUUCUUUCGUUAAUUGCUAAAUGCAACUGGCUGGCCAAAGCUAUUAAAAUUGAAAAAAAAAACA- ....((((((........(((((((((((....((.(((((.((.....)).))))).....((((.((((.....)))).))))..))..)))))))))))))))))..........- ( -22.80) >consensus AUAAUUCAAUAUAUUUAUUUUAAUGGCUUACAUGCAAAUUGUGCACUUUGUUCAAUUCUUUCGUUAAUUGCUAAAUGCAACUGGCUGGCCAAAGCUAUUAAAAUUGAAAAAAAAAACA_ ....((((((........(((((((((((....((.(((((.((.....)).))))).....((((.((((.....)))).))))..))..)))))))))))))))))........... (-22.80 = -22.80 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:50 2006