Locus 1252

Sequence ID 3R_DroMel_CAF1
Location 3,760,292 – 3,760,382
Length 90
Max. P 0.589469
window2037

overview

Window 7

Location 3,760,292 – 3,760,382
Length 90
Sequences 4
Columns 94
Reading direction forward
Mean pairwise identity 83.33
Mean single sequence MFE -15.10
Consensus MFE -10.65
Energy contribution -11.90
Covariance contribution 1.25
Combinations/Pair 1.00
Mean z-score -1.58
Structure conservation index 0.71
SVM decision value 0.11
SVM RNA-class probability 0.589469
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3760292 90 + 27905053
UAUU--UUACAAUGUCAAUAAGAAUUUUCGUUGUAAUGCAAUAUUACAAUUAGAGUUUCGCAAGACAUCGAUGAAACACUAACUUAA--AUAUA
..((--((((.(((((.....(((((((.(((((((((...))))))))).))))))).....))))).).)))))...........--..... ( -15.40)
>DroSec_CAF1 13761 94 + 1
UAUUUUUUACAAUGUCAAUGAGAAUUUUCGUUGUAAUACAAUAUUACAAUUAGAGUUUCGCAAGACAUCGAUGAAACACUAGCCUAAAUAUAUA
....((((((.(((((.....(((((((.(((((((((...))))))))).))))))).....))))).).))))).................. ( -15.60)
>DroSim_CAF1 14198 87 + 1
UAUUUUUUACAAUGUCAAUGAGAAUUUUCGUUGUAAUACAAUAUUACAAUUAGAGUUUCGCAAGACAUCGAUGAAACACUA-------UAUAUA
....((((((.(((((.....(((((((.(((((((((...))))))))).))))))).....))))).).))))).....-------...... ( -15.60)
>DroAna_CAF1 12788 85 + 1
UAUU--AUACAAUGUCGAUGAGAAUUAUUG---UUAUUAAAUAUUACAAUCAGAGUUUCGCAAGACAUCGAUAGAG--UUAACCUAA--AUAUA
....--..((..((((((((......((((---(.((.....)).))))).......((....))))))))))..)--)........--..... ( -13.80)
>consensus
UAUU__UUACAAUGUCAAUGAGAAUUUUCGUUGUAAUACAAUAUUACAAUUAGAGUUUCGCAAGACAUCGAUGAAACACUAACCUAA__AUAUA
.........(.(((((.....(((((((.((((((((.....)))))))).))))))).....))))).)........................ (-10.65 = -11.90 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:38 2006