Locus 1251

Sequence ID 3R_DroMel_CAF1
Location 3,757,410 – 3,757,500
Length 90
Max. P 0.892582
window2036

overview

Window 6

Location 3,757,410 – 3,757,500
Length 90
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 79.15
Mean single sequence MFE -30.42
Consensus MFE -20.50
Energy contribution -20.22
Covariance contribution -0.28
Combinations/Pair 1.20
Mean z-score -1.96
Structure conservation index 0.67
SVM decision value 0.97
SVM RNA-class probability 0.892582
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3757410 90 - 27905053
CUUCCACUUCGAUACUUGUGCGUCCUCCGAGGAGGGAACUCU--UCAACCCAAGAAAGGGGGCCACAAAGGGGAGGCACGCUCAUGCGUAAU
............(((..((((.(((.((((((((....))))--))..(((......))).........))))).))))((....))))).. ( -33.40)
>DroSec_CAF1 10849 78 - 1
CUUCCACUUCGAUACUUGUGCGUCCUCCGAGGAGGGAACUCC--CCUGACCAUGGAA------------GGGGAGGCACGCUCAUGCGUAAU
............(((..((((.(((((....)))))..((((--(((..(....).)------------))))))))))((....))))).. ( -30.20)
>DroSim_CAF1 11310 78 - 1
CUUCCACUUCGAUACUUGUGCGUUUUCCGAGGAGGGAACUCC--CCUGCCCAAGGAA------------GGGGAGGCACGCUCAUGCGUAAU
.((((.(((((..((......))....))))).)))).((((--(((.((...)).)------------))))))..((((....))))... ( -28.50)
>DroEre_CAF1 10778 86 - 1
C----CAUUCGAUACUUGUGCGUCUUCCGAGGAGGCAACUCC--UCAGCCAAAGAAAGGGGACCACAACGGGGAGGCACGCUCAUGCGUAAU
.----.......(((..((((.((((((((((((....))))--))..((.......)))))((.....))))).))))((....))))).. ( -31.10)
>DroYak_CAF1 11035 88 - 1
C----CAUUCGAGACUUGUGCGUCUUCCGAGGAGGCAACUCCCCCCAACCAAAGAAAGGGGACCACAAAGGGGAGGCAGGCUCAUGCGUAAU
.----.....(((.(((((....(((((..((((....))))((((...........)))).........)))))))))))))......... ( -28.90)
>consensus
CUUCCACUUCGAUACUUGUGCGUCUUCCGAGGAGGGAACUCC__CCAGCCCAAGAAAGGGG_CCACAA_GGGGAGGCACGCUCAUGCGUAAU
............(((..((((.(((((...((((....))))..((.......))..............))))).))))((....))))).. (-20.50 = -20.22 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:37 2006