Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,748,730 – 3,748,850 |
Length | 120 |
Max. P | 0.538794 |
Location | 3,748,730 – 3,748,850 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.78 |
Mean single sequence MFE | -34.84 |
Consensus MFE | -17.79 |
Energy contribution | -17.65 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.37 |
Mean z-score | -1.69 |
Structure conservation index | 0.51 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.538794 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3748730 120 - 27905053 CCUCCUUGUCCAGCGAGAUCUCGAUCAGGCGCAGCUCUUUAUUGGGCAAGCUGUUCAGCUUGCCGUCCGAUUGCAACUGUGCUUUGGUGCGCCUUAGCAUGAGUGACUUCAUUAGCAGAU ....((((.....))))((((.....(((((((...........((((((((....))))))))..((((..(((....))).)))))))))))..((...((((....)))).)))))) ( -39.20) >DroVir_CAF1 2506 120 - 1 CGUCCGUAUCGAGAUUCAUUUCAAUCAAGCGUACUUCCUUUUUGGGCAAACUGUUCAGUUUGCCAUCCAGCUGGAGCUGGGCCUUGGUCCGCCGCAACAUUAGGGAUUUCAUCAGCAAAU ..........(((((((...........(((.(((.........((((((((....)))))))).((((((....))))))....))).)))...........))))))).......... ( -33.15) >DroGri_CAF1 2396 120 - 1 CAUCCUUGUCGAGAUUCAUCUCGAUCAAGCGUAUCUCUUUGUUAGGCAAACUACUGAGUUUACCAUCCAGCUGCAGUUGCGCCUUGGUGCGCCUCAACAUUAACGAUUUCAUUAGCAAAU ....((((((((((....)))))).))))(((.......((((((((.....((((((((........)))).)))).((((....)))))))).))))...)))............... ( -31.00) >DroYak_CAF1 2304 120 - 1 CCUCUUUUUCCAGCGAGAUCUCAAUCAGGCGCAAAUCUUUAUUUGGCAAGCUGGUCAGUUUGCCAUCCGAUUGCAACUGUGCUUUUGUGCGCCUCAGCAUUAGUGACUUCAUUAAGAGAU .(((..........)))(((((....(((((((..........(((((((((....)))))))))..(((..(((....)))..)))))))))).....((((((....))))))))))) ( -38.50) >DroMoj_CAF1 2395 120 - 1 CAUCCGUAUCGAGAUGCAUUUCAAUCAAACGAACUUCCUUAUUGGGCAAAUUGCUCAGCUUGCCAUCCAGCUGCAGCUGCGCCUUGGUCCGUCUCAACAUUAUGGACUUCAUCAGCAGAU ..((((((..((((((...(((........)))...((.....((((.....((((((((........))))).)))...)))).))..)))))).....)))))).............. ( -26.80) >DroAna_CAF1 2217 120 - 1 CAUCUUUGUCCAAUGAAAUCUCGAUCAUGCGCAGCUCCUUGUUGGGCAAGUUAUUGAGCUUGCCUUCCACUUGCAACUGUGCCUUGGUGCGCCGGAGCAUGAGAGACUUCAUCAACAGAU ....(((((...(((((.((((..((((((((((.....((..(((((((((....)))))))))..)).))))..(.((((......)))).)..)))))))))).)))))..))))). ( -40.40) >consensus CAUCCUUGUCCAGAGACAUCUCAAUCAAGCGCACCUCCUUAUUGGGCAAACUGUUCAGCUUGCCAUCCAGCUGCAACUGUGCCUUGGUGCGCCUCAACAUUAGGGACUUCAUCAGCAGAU ............................(((((...........((((((((....))))))))..((((..((......)).)))))))))............................ (-17.79 = -17.65 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:34 2006