Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,746,463 – 3,746,606 |
Length | 143 |
Max. P | 0.754217 |
Location | 3,746,463 – 3,746,581 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 88.47 |
Mean single sequence MFE | -32.18 |
Consensus MFE | -21.82 |
Energy contribution | -21.74 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.18 |
Mean z-score | -1.95 |
Structure conservation index | 0.68 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.517169 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3746463 118 - 27905053 UCAGAGUCUUCUGACUCCUGGGAAUUUUGCGAGUUGUCGGACUCAUCGGACUUUUCGGAUUCCGCAGUCUCACUCGACUGGGACUCUUCCUCCUCUGAUUGCGUUUCAUCUAUAACCA ((((((((....)))).))))(((...((((((((....)))))((((((......(((.(((.(((((......)))))))).)))......)))))).))).)))........... ( -34.60) >DroSec_CAF1 97 118 - 1 UUAGAGUCUUCAGACUCCUGGGAAUUCUGCGAGUUCUCGGACUCACCGGACUUAUCGGAUUCCGCAGACUCACUCGACUGGGACUCCUCCUCCUCUGAUUCCGUUUCAUCUAUAACCA ...(((((....)))))..((((((((...))))))))(((.(((..(((......(((.(((.(((.(......).)))))).)))...)))..))).)))................ ( -31.90) >DroSim_CAF1 99 118 - 1 UUAGAGUCUUCAGACUCCUGGGAAUUCUGCGAGUUCUCGGACUCACCGGACUUAUCGGAUUCCGCAGACUCACUCGACUGGGACUCCUCCUCCUCUGAUUCUGUUUCAUCUAUAACCA .((((.....((((.((..((((..((((((((((....))))).((((.....)))).....)))))((((......))))........))))..)).)))).....))))...... ( -32.60) >DroEre_CAF1 111 115 - 1 UCAGAGUUGUCAGAAUCCUGGGAAUUCUGUGAGUUUUCGGAUUCACCGGACUCUUCGGAUUGCGCUGACUCACUCGUCUGGAACUCC---UCGUCUGAUUUCGUUUCAUCUAUAACCA ...((((.((((((((((..(((.(((.(((((((....))))))).))).)))..)))))...)))))..))))...((((((...---((....))....)))))).......... ( -31.50) >DroYak_CAF1 60 118 - 1 UCAGAGACUUCAGACUCCUGGGAAUUUUGUGAGUUCUCGGAUUCACCGGACUCUUCAGAUUCCGCUGACUCACUUGACUGGGCCUCCUCCUCCUCCGAUUCCGUUUCAUCUAUAACCA ...(((((..(((....)))((((((..(((((((..((((.((....((....)).)).))))..)))))))..((..(((......)))..)).)))))))))))........... ( -30.30) >consensus UCAGAGUCUUCAGACUCCUGGGAAUUCUGCGAGUUCUCGGACUCACCGGACUUUUCGGAUUCCGCAGACUCACUCGACUGGGACUCCUCCUCCUCUGAUUCCGUUUCAUCUAUAACCA ...(((((.((((.....((((...((((((((((....)))))...(((.((....)).)))))))))))).....)))))))))................................ (-21.82 = -21.74 + -0.08)
Location | 3,746,503 – 3,746,606 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 88.45 |
Mean single sequence MFE | -37.04 |
Consensus MFE | -29.72 |
Energy contribution | -29.92 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.17 |
Mean z-score | -1.64 |
Structure conservation index | 0.80 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.754217 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3746503 103 - 27905053 AGCGGACGGACGAACGCUGUCGUCCUCAGAGUCUUCUGACUCCUGGGAAUUUUGCGAGUUGUCGGACUCAUCGGACUUUUCGGAUUCCGCAGUCUCACUCGAC .(((((.((((((......))))))...(((((....)))))(((..((.((((.(((((....)))))..)))).))..)))..))))).(((......))) ( -36.30) >DroSec_CAF1 137 103 - 1 AGCGGACGGACGAAAGCUGUCGUCCUUAGAGUCUUCAGACUCCUGGGAAUUCUGCGAGUUCUCGGACUCACCGGACUUAUCGGAUUCCGCAGACUCACUCGAC .((((((((.(....)))))).((((..(((((....)))))..))))....)))(((((..((((....((((.....))))..))))..)))))....... ( -38.20) >DroSim_CAF1 139 103 - 1 AGCGGACGGACGAAAGCUGUCGUCCUUAGAGUCUUCAGACUCCUGGGAAUUCUGCGAGUUCUCGGACUCACCGGACUUAUCGGAUUCCGCAGACUCACUCGAC .((((((((.(....)))))).((((..(((((....)))))..))))....)))(((((..((((....((((.....))))..))))..)))))....... ( -38.20) >DroEre_CAF1 148 103 - 1 GGCGGGCGGACGAACGCUGUCGUCCUCAGAGUUGUCAGAAUCCUGGGAAUUCUGUGAGUUUUCGGAUUCACCGGACUCUUCGGAUUGCGCUGACUCACUCGUC ((((((.((((((......))))))...((((((.(..(((((..(((.(((.(((((((....))))))).))).)))..)))))..).)))))).)))))) ( -39.80) >DroYak_CAF1 100 103 - 1 GACGGGCGGACGAACGCUGUCGUCAUCAGAGACUUCAGACUCCUGGGAAUUUUGUGAGUUCUCGGAUUCACCGGACUCUUCAGAUUCCGCUGACUCACUUGAC (((((.((......)))))))((((...(((...........((((((((((...))))))))))..(((.((((.((....)).)))).))))))...)))) ( -32.70) >consensus AGCGGACGGACGAACGCUGUCGUCCUCAGAGUCUUCAGACUCCUGGGAAUUCUGCGAGUUCUCGGACUCACCGGACUUUUCGGAUUCCGCAGACUCACUCGAC .(((((.((((((......))))))...((((((...((.(((.((((((((...))))))))))).))...)))))).......)))))............. (-29.72 = -29.92 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:30 2006