Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,744,355 – 3,744,460 |
Length | 105 |
Max. P | 0.592099 |
Location | 3,744,355 – 3,744,460 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 89.84 |
Mean single sequence MFE | -36.33 |
Consensus MFE | -28.00 |
Energy contribution | -30.00 |
Covariance contribution | 2.00 |
Combinations/Pair | 1.12 |
Mean z-score | -1.55 |
Structure conservation index | 0.77 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.592099 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3744355 105 - 27905053 AAACGGCCGCUAUCCCUCGGCAAACACAUUAGUUGUUUGCCCCAUGAGCGUUAUGUGUCAGUGGGCCCAUGAGGUGGCCUCCAAGGUAGCGCAAAAUGCCAUUAG ....((((((((((((((((((((((.......))))))))((((..(((.....)))..))))......))))(((...))).)))))))......)))..... ( -34.90) >DroSim_CAF1 6203 105 - 1 AAACGGUCGCUAUCCCUCGGCAAACACAUUAGUUGUUUGCCCCAUGAGCGUCAUGUGUCAGUGGGCCCAUGAAGUGGCCUCCAAGGUGGCGCAAAAUGCCAUUAG ....(((((((.......((((((((.......)))))))).((((.((.((((......)))))).)))).))))))).....(((((((.....))))))).. ( -36.60) >DroEre_CAF1 5949 105 - 1 AAGCGGUCGGUUUCCGUCGGCCAACACAUUAGUUGUUUGCCCCAUGAACGUAAUAUGCCAGUGGGGCCAGGAGGUAACCUCCAAGGUGGCGCCAAAUGCCAUUAG ((((((((((......))))))(((......)))))))(((((((...(((...)))...)))))))..(((((...)))))..(((((((.....))))))).. ( -36.20) >DroYak_CAF1 7145 105 - 1 AAACGGUCGCUUUCCCUCGGCAAACACUUUAGUUGUUUGCCCCAUGAGCGUUAUGUGCCAGUGGGCCCAGGAGGUAACCUCCAAGGUGGCGCAAAAUGCCAUAAG ....((((((((......(((((((((....).))))))))....)))))...((((((.....(((..(((((...)))))..)))))))))....)))..... ( -37.60) >consensus AAACGGUCGCUAUCCCUCGGCAAACACAUUAGUUGUUUGCCCCAUGAGCGUUAUGUGCCAGUGGGCCCAGGAGGUAACCUCCAAGGUGGCGCAAAAUGCCAUUAG ....((((((((((....(((((((((....).))))))))((((..(((.....)))..)))).....)))))))))).....(((((((.....))))))).. (-28.00 = -30.00 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:27 2006