Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,743,015 – 3,743,135 |
Length | 120 |
Max. P | 0.587900 |
Location | 3,743,015 – 3,743,135 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.25 |
Mean single sequence MFE | -31.38 |
Consensus MFE | -25.62 |
Energy contribution | -25.82 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.13 |
Mean z-score | -1.43 |
Structure conservation index | 0.82 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.587900 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3743015 120 - 27905053 GGCACCAACGACAAAAUCAUUGUUACAUCUCAGUGGGUAAGCUAUCUCGCAAUCGUCCGUAAAAGACUGCAGGAUCUAUCAUGGGAAACACUUGACUUUAAUGGCCAGCUGACCGCCAAA (((..............(((((........)))))(((.(((((((..(((.((..........)).)))..)))...(((..(....)...)))...........)))).))))))... ( -28.00) >DroSec_CAF1 5025 120 - 1 GGCACCAAUGACAAAAUCAUUGUAACAUCUCAGUGGGUGAGCUAUCUCGCCAUCAUCCGUAAACGACUGCAGGAUCUAUCAUGGGAAACACUUGACUUUAAUGGUCAGCUGACCGCCAAA (((..((((((.....)))))).....(((((.((((((((....))))))...(((((((......))).))))....)))))))..((.((((((.....)))))).))...)))... ( -33.10) >DroSim_CAF1 4856 120 - 1 GGCACUAAUGACAAAAUCAUUGUAACAUCUCAGUGGGUGAGCUAUCUCGCCAUCAUCCGUAAACGACUGCAGGAUCUAUCAUGGGAAACACUUGACUUUAAUGGCCAGCUGACCGCCAAA (((..............(((((........)))))(((.((((.....(((((.(((((((......))).))))...(((..(....)...))).....))))).)))).))))))... ( -32.30) >DroEre_CAF1 4613 120 - 1 GGCACCAACGACAAAAUCAUUGUUACAUCACAGUGGGUGAGCUAUCUCACCAUCAUCCGUAAACGACUGCAGGAUCUGUCAUGGGAAACACUUGACUUUAAUGGCCAGUUAAGCGCCAAA (((.(((..((((....((((((......))))))((((((....))))))...(((((((......))).)))).)))).)))......(((((((.........))))))).)))... ( -33.40) >DroYak_CAF1 5803 120 - 1 GGCACCAACGACAAAAUUAUUGUUACAUCUCAGUGGGUGAGCUAUCUCGCCAUCAUCCGUAAACGACUGCAGGAUCUAUCAUGGGAAACACUUGACUUUAAUGGCCAGCUCAGCGCCAAA (((......(((((.....)))))...........(.((((((.....(((((.(((((((......))).))))...(((..(....)...))).....))))).)))))).))))... ( -30.10) >consensus GGCACCAACGACAAAAUCAUUGUUACAUCUCAGUGGGUGAGCUAUCUCGCCAUCAUCCGUAAACGACUGCAGGAUCUAUCAUGGGAAACACUUGACUUUAAUGGCCAGCUGACCGCCAAA (((..............(((((........)))))(((.((((.....(((((.(((((((......))).))))...(((..(....)...))).....))))).)))).))))))... (-25.62 = -25.82 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:26 2006