Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 681,743 – 681,871 |
Length | 128 |
Max. P | 0.902221 |
Location | 681,743 – 681,839 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.20 |
Mean single sequence MFE | -29.38 |
Consensus MFE | -21.10 |
Energy contribution | -21.06 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.05 |
Mean z-score | -2.30 |
Structure conservation index | 0.72 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.902221 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 681743 96 + 27905053 AAAUAAACACACUC-----G------------AACACACUGUGUUGACACGUGUCAAAACUUCCGUUUGAAAUGGCUCGGAAAUGCUUCCGAGGCA-------CUCCGUGCUGGCCCUCU .......(((((((-----(------------(((.....((.(((((....))))).))....))))))..((.(((((((....))))))).))-------....))).))....... ( -27.10) >DroSec_CAF1 101142 96 + 1 AAACAAACACACUC-----G------------CACACACUGUGUUGACACGUGUCAAAACUUCCGUUUGAAAUGGCUCGGAAAUGCUUCCGAGGCA-------CUCCGUGCUGGCCCUCU ...(((((......-----(------------(((.....))))((((....))))........)))))....(((((((((....))))))((((-------(...))))).))).... ( -26.80) >DroSim_CAF1 101400 96 + 1 AAACAAACACACUC-----G------------CACACACUGUGUUGACACGUGUCAAAACUUCCGUUUGAAAUGGCUCGGAAAUGCUUCCGAGGCA-------CUCCGUGCUGGCCCUCU ...(((((......-----(------------(((.....))))((((....))))........)))))....(((((((((....))))))((((-------(...))))).))).... ( -26.80) >DroEre_CAF1 98457 112 + 1 AAACAAACACACACUCUCCACACUCCAGCACUCUAGCACUGUGUUGACACGUGUCAAAACUUCCGUUUGAAAUGGCUCGGAAAUGCUUCCGAGGCA-------CUCCGUGCUGGC-CUCU ........................(((((((((.(((...((.(((((....))))).))....))).))..((.(((((((....))))))).))-------....))))))).-.... ( -32.60) >DroYak_CAF1 111072 109 + 1 AAACAAACAAACAC-----ACAAU------CUCUAGCACUGUGUUGACACGUGUCAAAACUUCCGUUUGAAAUGGCUCGGAAAUGCUUCCGAGGCACUUGGCACUUCGUGCUGGCCCUCU ..............-----.....------..(((((((.(((....)))((((((((((....))))....((.(((((((....))))))).))..))))))...)))))))...... ( -33.60) >consensus AAACAAACACACUC_____G____________CACACACUGUGUUGACACGUGUCAAAACUUCCGUUUGAAAUGGCUCGGAAAUGCUUCCGAGGCA_______CUCCGUGCUGGCCCUCU .......(((((.......................((((.(((....)))))))..................((.(((((((....))))))).))...........))).))....... (-21.10 = -21.06 + -0.04)
Location | 681,766 – 681,871 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.35 |
Mean single sequence MFE | -36.80 |
Consensus MFE | -27.48 |
Energy contribution | -27.68 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -2.19 |
Structure conservation index | 0.75 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.751362 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 681766 105 - 27905053 UUACCCCAAUUUCG-GUUUCGAU-------GGCUUUUUUGAGAGGGCCAGCACGGAG-------UGCCUCGGAAGCAUUUCCGAGCCAUUUCAAACGGAAGUUUUGACACGUGUCAACAC .......((((((.-((((.(.(-------(((((((....)))))))).)..((((-------((.(((((((....))))))).)))))))))).))))))(((((....)))))... ( -36.20) >DroSec_CAF1 101165 105 - 1 UUACCCCAAUUUCG-GUUUCGAU-------GGCUUUUUUGAGAGGGCCAGCACGGAG-------UGCCUCGGAAGCAUUUCCGAGCCAUUUCAAACGGAAGUUUUGACACGUGUCAACAC .......((((((.-((((.(.(-------(((((((....)))))))).)..((((-------((.(((((((....))))))).)))))))))).))))))(((((....)))))... ( -36.20) >DroSim_CAF1 101423 105 - 1 UUACCCCAAUUUCG-GUUUCGAU-------GGCUUUUUUGAGAGGGCCAGCACGGAG-------UGCCUCGGAAGCAUUUCCGAGCCAUUUCAAACGGAAGUUUUGACACGUGUCAACAC .......((((((.-((((.(.(-------(((((((....)))))))).)..((((-------((.(((((((....))))))).)))))))))).))))))(((((....)))))... ( -36.20) >DroEre_CAF1 98497 105 - 1 UUACCCCAAUUUCGGGUUUCGAU-------GGCUUUUUUGAGAG-GCCAGCACGGAG-------UGCCUCGGAAGCAUUUCCGAGCCAUUUCAAACGGAAGUUUUGACACGUGUCAACAC ....(((......)))(((((.(-------((((((.....)))-))))....((((-------((.(((((((....))))))).))))))...)))))((.(((((....))))).)) ( -36.30) >DroYak_CAF1 111101 120 - 1 UUACCCCAAUUUCGGGCUUCGAUGGCUGAUGGCUUUUUUGAGAGGGCCAGCACGAAGUGCCAAGUGCCUCGGAAGCAUUUCCGAGCCAUUUCAAACGGAAGUUUUGACACGUGUCAACAC .......((((((((((((((...(((...(((((((....)))))))))).)))))).))(((((.(((((((....))))))).)))))......))))))(((((....)))))... ( -39.10) >consensus UUACCCCAAUUUCG_GUUUCGAU_______GGCUUUUUUGAGAGGGCCAGCACGGAG_______UGCCUCGGAAGCAUUUCCGAGCCAUUUCAAACGGAAGUUUUGACACGUGUCAACAC ..............................(((((((....))))))).(((((..........((.(((((((....))))))).))..((((((....).)))))..)))))...... (-27.48 = -27.68 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:51 2006