| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,721,550 – 3,721,650 |
| Length | 100 |
| Max. P | 0.982032 |
| Location | 3,721,550 – 3,721,650 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 74.07 |
| Mean single sequence MFE | -29.34 |
| Consensus MFE | -12.72 |
| Energy contribution | -12.95 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.37 |
| Mean z-score | -2.55 |
| Structure conservation index | 0.43 |
| SVM decision value | 1.90 |
| SVM RNA-class probability | 0.982032 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3721550 100 + 27905053 GUUUCGAAACAACAAUGCAGGCGGACGCGUUUGUAGCUGGCCAAAAGAGUGCG-GAAGCAGCGAAAUAGCAGCCACAAAAUACGGCUAGAACGCGUUC-------GAA .....................(((((((((((.((((((..........(((.-...)))((......))............))))))))))))))))-------).. ( -33.30) >DroPse_CAF1 8358 86 + 1 GUUUUGGAACAACAAUGCAGGCGGACGCGUUUGUGGCUUGACUGAAAAUUU-------AAACGAAA----AACCUAAAAA----GCUAAAACGCGUUC-------GUA ((.(((......))).))..((((((((((((.((((((............-------........----........))----))))))))))))))-------)). ( -25.59) >DroSim_CAF1 9027 100 + 1 GUUUCGAAACAACAAUGCAGGCGGACGCGUUUGUAGCUGGCCCAAAGAGUGCG-GAAGCAGCGAAAUAGCAGCCACAAAAUACGGCUAGAACGCGUUC-------GAA .....................(((((((((((.((((((..........(((.-...)))((......))............))))))))))))))))-------).. ( -33.30) >DroEre_CAF1 13220 107 + 1 GUUUUGAAUCAACAAUGCAGGCGGACGCGUUCGUUGCUGGCCAAAAGAGUGUG-GAAGCAGCGAAAUAAGAGCCACAAAACACGGCUAGAACGCGUUCGAACUUCGAA ((.(((......))).))...(((((((((((((((((..(((........))-).))))))........((((.........)))).)))))))))))......... ( -37.00) >DroAna_CAF1 6907 90 + 1 GUUUUGAAACAACAAUGGAGGCGGACGCGUUCGGUUCUGGCCAGUAGAGUGUACGAAACAGUGA-----CGACCCCAA------GCUAGAACGAGUUC-------GAA ..((((((.......((((.((....)).))))((((((((.......((.(((......))))-----)........------))))))))...)))-------))) ( -21.26) >DroPer_CAF1 8212 86 + 1 GUUUUGGAACAACAAUGCAGGCGGACGCGUUUGUGGCUUGACUGAAAAUUU-------AAACGAAA----AACCUAAAAA----GCUAAAACGCGUUC-------GUA ((.(((......))).))..((((((((((((.((((((............-------........----........))----))))))))))))))-------)). ( -25.59) >consensus GUUUUGAAACAACAAUGCAGGCGGACGCGUUUGUAGCUGGCCAAAAGAGUG_G_GAAGCAGCGAAA___CAACCACAAAA____GCUAGAACGCGUUC_______GAA ......................((((((((((.((((............(((.....)))((.........))...........)))))))))))))).......... (-12.72 = -12.95 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:20 2006