Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,720,078 – 3,720,173 |
Length | 95 |
Max. P | 0.516634 |
Location | 3,720,078 – 3,720,173 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 73.11 |
Mean single sequence MFE | -27.10 |
Consensus MFE | -11.99 |
Energy contribution | -12.67 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.25 |
Mean z-score | -1.70 |
Structure conservation index | 0.44 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.516634 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3720078 95 - 27905053 CUGCUUUCGUGGUUGUGGCAAUUAAAACGCGCAAAUAUGCACAAAAA-CCUCGGUGCAAUGCAA----CUUCGUUUU-------UUUGUCACUGC-CUGCAAUCGGCA ..(((...(((((.(((((((..((((((.(((....(((((.....-.....))))).)))..----...))))))-------.))))))).))-).))....))). ( -26.00) >DroPse_CAF1 6875 102 - 1 CU--UUUUGUUGGU----GAAUCAAAACGCGCAAAAAUGCGCUAAAAUACUCAACGGAAUUCAAUGCACUUUGUGGCUAAGACCGUUGUCGAUGCGUUGCAAUUGCCA ..--....((((((----........))(((((....))))).........))))(((((((((((((.((.(..((.......))..).))))))))).)))).)). ( -25.00) >DroSim_CAF1 7140 94 - 1 CUGCUUUCGUGGCUGUGGCAAUUAAAACGCGCAAAUAUGCGCAAAAA-CCUCGGUGCAAUGCAA----CUUCGUUU--------UUUGUCACCGC-CUGCAAUCGGCA ..(((...(((((.(((((((..((((((((((....))))).....-......(((...))).----....))))--------)))))))).))-).))....))). ( -28.30) >DroEre_CAF1 11811 93 - 1 CUGCUUUCGUGGUUGUGGCAAUUAAAACGCGCAAAUAUGCGCAA-AA-CCCCGGUGCAAUGCAA----CUUCGUUU--------UUUGUCACCGC-CUGCAAUCGGCA ..(((.....(((((((((.........(((((....)))))..-..-....(((((((.((..----....))..--------.))).))))))-).))))))))). ( -28.90) >DroPer_CAF1 6755 102 - 1 CU--UUUUGUUGGU----GAAUCAAAACGCGCAAAAAUGCGCUAAAAUACUCAACGGAAUUCAAUGCACUUUGCGGCUAAGACCGUUGUCGAUGCGUUGCAAUUGCCA ..--....((((((----........))(((((....))))).........))))(((((((((((((....((((......))))......))))))).)))).)). ( -27.30) >consensus CUGCUUUCGUGGGUGUGGCAAUUAAAACGCGCAAAUAUGCGCAAAAA_CCUCGGUGCAAUGCAA____CUUCGUUU________UUUGUCACUGC_CUGCAAUCGGCA ...........((((..(((........(((((....))))).........((((((((..........................))).)))))...)))...)))). (-11.99 = -12.67 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:19 2006