Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,715,334 – 3,715,449 |
Length | 115 |
Max. P | 0.616636 |
Location | 3,715,334 – 3,715,449 |
---|---|
Length | 115 |
Sequences | 6 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 81.43 |
Mean single sequence MFE | -34.60 |
Consensus MFE | -22.92 |
Energy contribution | -24.15 |
Covariance contribution | 1.23 |
Combinations/Pair | 1.25 |
Mean z-score | -1.60 |
Structure conservation index | 0.66 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.616636 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3715334 115 - 27905053 CGGCCACGACAUUAUACCAUUCUCAUUCGCCGAUUC---GUUAUCUCGAUUUUUUCCAGCUGCUCUUCCCGCUGCAAUUUAGCGAGCUGCUGGGCAAAGUCGAUGUGGAGGCCAACGU .((((.(.(((....................(((..---...)))((((((((.((((((.((((.....((((.....)))))))).)))))).))))))))))).).))))..... ( -39.40) >DroPse_CAF1 2175 109 - 1 CGGUGGCCCCAC-------UUUUCAUUCGUUCUUCCUCUGUGGUCU-GUUCU-UUUCAGCUGCUCUUCCCGCUGAACUACAGCGAAUUGCUGGGUAAAGUCGAUGUGGAGGCCAAUGU ...(((((((((-------.......(((..((((((..(..((((-((...-.((((((..........))))))..))))...))..).)))..))).))).)))).))))).... ( -31.80) >DroSim_CAF1 2205 114 - 1 CGGCCACGACAUUAUACCAUUCUCAUUCGCCGAUUC---GUUAUCUCGAUUU-UUCCAGCUGCUCUUCCCGCUGCAAUUUAGCGAGCUGCUGGGCAAAGUCGAUGUGGAGGCCAACGU .((((.(.(((....................(((..---...)))(((((((-(((((((.((((.....((((.....)))))))).)))))).))))))))))).).))))..... ( -38.60) >DroEre_CAF1 7304 114 - 1 CGGCCACGACAUUAUACCAUUCUCAUUCGCCGAUUC---GUUAUCUCGAUUU-UUCCAGUUGCUCUUCCCGCUGCAAUUUAGCGAGCUGCUGGGCAAAGUCGAUGUGGAGGCCAACGU .((((.(.(((....................(((..---...)))(((((((-(((((((.((((.....((((.....)))))))).)))))).))))))))))).).))))..... ( -37.00) >DroYak_CAF1 2221 114 - 1 CGGCCACAAUAUUAUACCAUUCUCAUUCGCCGAUUC---GUUAUCUCGAUUU-UUCCAGUUGCUCUUCCCGCUGCAAUUUAGCGAGCUGCUUGGCAAAGUCGAUGUGGAGGCUAACGU ...(((((.......................(((..---...)))(((((((-(.(((((.((((.....((((.....)))))))).)).))).)))))))))))))..((....)) ( -27.60) >DroPer_CAF1 2174 109 - 1 CGGUGGCCCCAC-------UUUUCAUACGUGCUUCCUCUGUGGUCU-GUUCU-UUUCAGCUGCUCUUCCCGCUGAACUACAGCGAAUUGCUGGGCAAAGUCGAUGUGGAGGCCAAUGU ...(((((((((-------...((.....(((((.....(..(.((-(....-...))))..)......(((((.....))))).......))))).....)).)))).))))).... ( -33.20) >consensus CGGCCACGACAUUAUACCAUUCUCAUUCGCCGAUUC___GUUAUCUCGAUUU_UUCCAGCUGCUCUUCCCGCUGCAAUUUAGCGAGCUGCUGGGCAAAGUCGAUGUGGAGGCCAACGU .((((.(.(((....................(((........)))(((((((..((((((.((((.....((((.....)))))))).))))))..)))))))))).).))))..... (-22.92 = -24.15 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:17 2006