Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,710,637 – 3,710,729 |
Length | 92 |
Max. P | 0.980843 |
Location | 3,710,637 – 3,710,729 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 93.36 |
Mean single sequence MFE | -19.05 |
Consensus MFE | -16.69 |
Energy contribution | -17.25 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.04 |
Mean z-score | -2.75 |
Structure conservation index | 0.88 |
SVM decision value | 1.87 |
SVM RNA-class probability | 0.980843 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3710637 92 - 27905053 AAUAACUAAAAUUCGCUGGCAGCGAAUAAAUUAACUUGCAUUACGCCCGACACCAAUCGCGUCACCGUAAAGUAACAGCCCACAAA-AAAUAA ..........((((((.....))))))........((((.(((((...(((.(.....).)))..))))).))))...........-...... ( -15.00) >DroSec_CAF1 68828 93 - 1 AAUAACUGAAAUUCGCUGGCAGCGAAUAAAUUAACUUGCAUUACGCCCGACACCAAUCGCGUCAGCGUAAAGUAACAGCCCACAAAAAAAUAA .....(((..((((((.....))))))........((((.((((((..(((.(.....).))).)))))).)))))))............... ( -21.10) >DroSim_CAF1 71727 93 - 1 AAUAACUGAAAUUCGCUGGCAGCGAAUAAAUUAACUUGCAUUACGCCCGACACCAAUCGCGUCAGCGUAAAGUAACAGCCCACAAAAAAAUAA .....(((..((((((.....))))))........((((.((((((..(((.(.....).))).)))))).)))))))............... ( -21.10) >DroYak_CAF1 67692 88 - 1 AAUAACUGAAAUUCGUUGGCAGCGAAUAAAUUAACUUGCAUUACGCCCGACACCAAUCGCGUCAGCGUCAAGUAACAGUACAAAAA-----AA ....((((..((((((.....))))))......(((((....((((..(((.(.....).))).)))))))))..)))).......-----.. ( -19.00) >consensus AAUAACUGAAAUUCGCUGGCAGCGAAUAAAUUAACUUGCAUUACGCCCGACACCAAUCGCGUCAGCGUAAAGUAACAGCCCACAAA_AAAUAA .....(((..((((((.....))))))........((((.((((((..(((.(.....).))).)))))).)))))))............... (-16.69 = -17.25 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:16 2006