Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,707,820 – 3,707,918 |
Length | 98 |
Max. P | 0.628431 |
Location | 3,707,820 – 3,707,918 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 83.70 |
Mean single sequence MFE | -26.98 |
Consensus MFE | -18.48 |
Energy contribution | -19.26 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.26 |
Mean z-score | -2.27 |
Structure conservation index | 0.68 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.628431 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3707820 98 + 27905053 AUUGAUGAGCACGACUUGAUAGACAUUUCGUGCUCGUUC-GACAUUCAUGUAUAGU--UUUUAAUGGCUGUCGAAUAGGAAAAUCAAUAUGAAAAGUUGUU ((((((((((((((..((.....))..))))))))((((-((((..(((.......--.....)))..))))))))......))))))............. ( -30.70) >DroPse_CAF1 68389 101 + 1 GUUGAUGGGGACGGCUUGAUAGACAUUUCGUGCCUGUUCUGACGUUCGUGCGCAGUAUUUUUAAUGCCUGUCGAUAGGGAAAAUCAAUACGGAAAAUUAUU (((((((((((((((.(((........))).))).)))(((.(((....))))))...........))))))))).......................... ( -21.70) >DroSec_CAF1 65698 87 + 1 AUUGAUAGGC-----------GACAUUUCGUGCUCGUUC-GACAUUCGUGUAUAGU--UUUUAAUGGCUGUCGAAUAGGAAAAUCAAUAUGAAAUGUUGUU .......(((-----------(((((((((((((..(((-((((..(((.......--.....)))..)))))))..))........)))))))))))))) ( -25.70) >DroSim_CAF1 68816 98 + 1 AUUGAUGAGCACGACUUGAUAGACAUUUCGUGCUCGUUC-GACAUUCGUGUAUAGU--UUUUAAUGGCUGUCGAAUAGGAAAAUCAAUAUGAAAAGUUGUU ((((((((((((((..((.....))..))))))))((((-((((..(((.......--.....)))..))))))))......))))))............. ( -30.30) >DroEre_CAF1 67437 98 + 1 AUUGAUGAGCACGACUUGAUAGACAUUUCGUGCUCGUUC-GACAUUCGUGUACACU--UUUUAAUGGCUGUCGAAUAGGAAAAUCAAUAUGAAAAGUUGUU ((((((((((((((..((.....))..))))))))((((-((((..(((.......--.....)))..))))))))......))))))............. ( -30.30) >DroPer_CAF1 74239 101 + 1 GUUGAUGGGGACGGCUUGAUAGACAUUUCGUGCCUGUUCCGACGUUCGUGCGCAGUAUUUUUAAUGCCUGUCGAUAGGGAAAAUCAAUACGGAAAAUUAUU ((((((.((((((((.(((........))).))).)))))....(((.((((((((((.....))).))).)).)).)))..))))))............. ( -23.20) >consensus AUUGAUGAGCACGACUUGAUAGACAUUUCGUGCUCGUUC_GACAUUCGUGUACAGU__UUUUAAUGGCUGUCGAAUAGGAAAAUCAAUAUGAAAAGUUGUU ((((((((((((((..((.....))..))))))))((((.((((..(((..............)))..))))))))......))))))............. (-18.48 = -19.26 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:12 2006