Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,707,129 – 3,707,228 |
Length | 99 |
Max. P | 0.991642 |
Location | 3,707,129 – 3,707,228 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 68.80 |
Mean single sequence MFE | -33.82 |
Consensus MFE | -11.57 |
Energy contribution | -16.95 |
Covariance contribution | 5.38 |
Combinations/Pair | 1.24 |
Mean z-score | -2.70 |
Structure conservation index | 0.34 |
SVM decision value | 2.28 |
SVM RNA-class probability | 0.991642 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3707129 99 + 27905053 GUCAGCAUCAACAGCCCCUUGCAACUUGGUCGCCAGCCAAGAGCCAACAUGGUGAAGGGUUCAGAGGUUGGGGCUAGGGUUGAAAAGGGGUUUUGAAGA .......((((.((((((((.((((((((((.((((((..(((((..(.....)...)))))...))))))))))).)))))..))))))))))))... ( -40.60) >DroSec_CAF1 65054 99 + 1 GUCAGCAUCAACAGCCCCUUGCAACUUGGUCGCCAGCCAAAAGCCAACAUGGUGAAGGGUUCAGAGGUUGGGGCUAGGGCUAAAAAGGGGUUUUGAAGA .......((((.((((((((....(((((((.((((((....(((.....)))((.....))...)))))))))))))......))))))))))))... ( -36.80) >DroSim_CAF1 68160 99 + 1 GUCAGCAUCAACAGCCCCUUGCAACUUGGUCGCCAGCCAAGAGCCAACAUGGUGAAGGGUUCAGAGGUUGGGGCUAGGGCUAAAAAGGGGUUUUGAAGA .......((((.((((((((....(((((((.((((((..(((((..(.....)...)))))...)))))))))))))......))))))))))))... ( -39.70) >DroEre_CAF1 66760 98 + 1 GUCAGCAUCAACAGCCCCUUGCAACUUGGUCGCCAGCCAAGAGCCCACAUGGUGAUGGGUUCAGAGGCUGAGGCUCGGGUUAA-AAGGGGUUUUGAAGA .......((((.((((((((..(((((((((..(((((..((((((((.....).)))))))...))))).))).))))))..-))))))))))))... ( -44.80) >DroYak_CAF1 63360 97 + 1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCCAACAUGGCGAUGGGUUCAGAGGCUGAGGAUAGGGUUUA--AGGGGUUUUGAAGA .......................................((((((.....)))..))).(((((((.((...((......)).--..)).))))))).. ( -12.50) >DroPer_CAF1 73571 83 + 1 --CAACGUCAACAGCCUCAUGCAACUUGGUCGUCAGCCAAGAGACCGAAUACUUUUGGGGAGAGAGG---AGACUCGA-----------CCCCCGAAGA --....(((....((.....))..((((((.....)))))).))).......((((((((...(((.---...)))..-----------.)))))))). ( -28.50) >consensus GUCAGCAUCAACAGCCCCUUGCAACUUGGUCGCCAGCCAAGAGCCAACAUGGUGAAGGGUUCAGAGGUUGAGGCUAGGGUUAA_AAGGGGUUUUGAAGA .......((((.((((((((....((.((((.((((((....(((.....)))((.....))...)))))))))).))......))))))))))))... (-11.57 = -16.95 + 5.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:10 2006