Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 681,231 – 681,370 |
Length | 139 |
Max. P | 0.980154 |
Location | 681,231 – 681,351 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.08 |
Mean single sequence MFE | -29.08 |
Consensus MFE | -26.36 |
Energy contribution | -26.80 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.03 |
Mean z-score | -1.72 |
Structure conservation index | 0.91 |
SVM decision value | 1.85 |
SVM RNA-class probability | 0.980154 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 681231 120 + 27905053 AAUCUGUUCGGACAACAGUAUUUUCUUUUGCACACUCAUCGAAAGGUAAUUAAAAUGUUUCGAUUUGAUUUCGAGACGCCGCCAUAUUGUGUUCGAUUUUGGAACAAUCAUGUGGCAUUA ...(((((.....)))))...........((......(((....))).........(((((((.......))))))))).(((((((..(((((.......)))))...))))))).... ( -30.30) >DroSec_CAF1 100636 120 + 1 AAUCUGUUCGGACAACAGUAUUUUCUUUUGCACACUCAUCGAAAGGUAAUUAAAAUGUUUCGAUUUGAUUUCGAGACGCCGCCAUAUUGUGUUCGAUUUGGGAACAAUCAUGUGGCAUUA ...(((((.....)))))...........((......(((....))).........(((((((.......))))))))).(((((((..(((((.......)))))...))))))).... ( -30.30) >DroSim_CAF1 100895 120 + 1 AAUCUGUUCGGACAACAGUAUUUUCUUUUGCACACUCAUCGAAAGGUAAUUAAAAUGUUUCGAUUUGAUUUCGAGACGCCGCCAUAUUGUGUUCGAUUUUGGAACAAUCAUGUGGCAUUA ...(((((.....)))))...........((......(((....))).........(((((((.......))))))))).(((((((..(((((.......)))))...))))))).... ( -30.30) >DroEre_CAF1 97941 120 + 1 AGUCCGUUCAGACAACAGUAUUUUCUUUUGCACACUCAUCGAAAGGUAAUUAAAAUGUUUCGAUUUGAUUUCGAGACGCCGCCAUAUUGUGUUCGAUUUUGGAACAAUCAUGUGGCAUUA .(((((.(((((.....(((........))).......((((((.((.......)).)))))))))))...)).)))...(((((((..(((((.......)))))...))))))).... ( -30.20) >DroYak_CAF1 110542 120 + 1 AAUCUGUUCGGACAACAGUAUUUUCUUUUGCACACUCAUCAUAAAGUGAUUAAAAUGUUUCGAUUUGAUUUUGAGACGCCGCCAUAUUGUUUUCAAUUUCGGAACAAUCAUGUGGCAUUA ...(((((.....)))))..............((((........))))........(((((((.......)))))))(((((...((((((((.......))))))))...))))).... ( -24.30) >consensus AAUCUGUUCGGACAACAGUAUUUUCUUUUGCACACUCAUCGAAAGGUAAUUAAAAUGUUUCGAUUUGAUUUCGAGACGCCGCCAUAUUGUGUUCGAUUUUGGAACAAUCAUGUGGCAUUA ...(((((.....)))))...........((......(((....))).........(((((((.......))))))))).(((((((..(((((.......)))))...))))))).... (-26.36 = -26.80 + 0.44)
Location | 681,271 – 681,370 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.89 |
Mean single sequence MFE | -31.32 |
Consensus MFE | -22.60 |
Energy contribution | -22.48 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.08 |
Mean z-score | -2.70 |
Structure conservation index | 0.72 |
SVM decision value | 1.64 |
SVM RNA-class probability | 0.969592 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 681271 99 + 27905053 GAAAGGUAAUUAAAAUGUUUCGAUUUGAUUUCGAGACGCCGCCAUAUUGUGUUCGAUUUUGGAACAAUCAUGUGGCAUUAUAAUGA-----------------GUUGGUUG----CUGUA ....(((((((((...(((((((.......)))))))...(((((((..(((((.......)))))...)))))))..........-----------------.)))))))----))... ( -29.90) >DroSec_CAF1 100676 99 + 1 GAAAGGUAAUUAAAAUGUUUCGAUUUGAUUUCGAGACGCCGCCAUAUUGUGUUCGAUUUGGGAACAAUCAUGUGGCAUUAUAAUGA-----------------GUUGCUUG----CUGUA ...((((((((.....(((((((.......)))))))...(((((((..(((((.......)))))...))))))).........)-----------------))))))).----..... ( -28.80) >DroSim_CAF1 100935 99 + 1 GAAAGGUAAUUAAAAUGUUUCGAUUUGAUUUCGAGACGCCGCCAUAUUGUGUUCGAUUUUGGAACAAUCAUGUGGCAUUAUAAUGA-----------------GUUGCUUG----CUGUA ...((((((((.....(((((((.......)))))))...(((((((..(((((.......)))))...))))))).........)-----------------))))))).----..... ( -28.80) >DroEre_CAF1 97981 116 + 1 GAAAGGUAAUUAAAAUGUUUCGAUUUGAUUUCGAGACGCCGCCAUAUUGUGUUCGAUUUUGGAACAAUCAUGUGGCAUUAUAAUGAUCUCGGGGACGCUGUGAGUUGGUUG----CUGUA ....(((((((((...(((((((.......)))))))((.(((((((..(((((.......)))))...)))))))..............(....)))......)))))))----))... ( -33.10) >DroYak_CAF1 110582 120 + 1 AUAAAGUGAUUAAAAUGUUUCGAUUUGAUUUUGAGACGCCGCCAUAUUGUUUUCAAUUUCGGAACAAUCAUGUGGCAUUAUAAUGAUCUAAGGGCCGCUGUGAGUCGGUGGCUGGCUGUA ....((((((((....(((((((.......)))))))(((((...((((((((.......))))))))...))))).......)))))....((((((((.....)))))))).)))... ( -36.00) >consensus GAAAGGUAAUUAAAAUGUUUCGAUUUGAUUUCGAGACGCCGCCAUAUUGUGUUCGAUUUUGGAACAAUCAUGUGGCAUUAUAAUGA_________________GUUGGUUG____CUGUA .....(((((......(((((((.......)))))))...(((((((..(((((.......)))))...))))))))))))....................................... (-22.60 = -22.48 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:49 2006