Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,706,143 – 3,706,243 |
Length | 100 |
Max. P | 0.611273 |
Location | 3,706,143 – 3,706,243 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 90.55 |
Mean single sequence MFE | -18.07 |
Consensus MFE | -14.19 |
Energy contribution | -13.25 |
Covariance contribution | -0.94 |
Combinations/Pair | 1.17 |
Mean z-score | -1.59 |
Structure conservation index | 0.78 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.611273 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3706143 100 - 27905053 AAAUGCG-ACUGUAUGUUGGAAUAUUCAACAUGUUUUAACAAAGUUGAAGUAAAUAUUUACAUGGCCAUAACUCACCAAUAUUUCGACAACUCAUCGUAGC ...((((-(.((..((((((((((((((((.(((....)))..))))))((((....)))).(((..........))).))))))))))...))))))).. ( -21.00) >DroSec_CAF1 64011 101 - 1 AAAUGCGAACUGUAUGUUGAAAUAUUCAACAUGUUUUAAUAAAGUUUAAGUAAAUAUUUACUUGGCCAUAAUUCACCAAUAUUUCGACAACUCAUCGUAGC ...(((((...((.((((((((((((.....(((....)))..(..(((((((....)))))))..)..........))))))))))))))...))))).. ( -19.30) >DroSim_CAF1 67125 100 - 1 AAAUGCG-ACUGUAUGUUGAAAUAUUCAACAUGUUUUAACAAAGUUUAAGUAAAUAUUUACAUGGCCAUAAUUCACCAAUAUUUCGACAACUCAUCGUAGC ...((((-(.((..(((((((((((........................((((....)))).(((..........))))))))))))))...))))))).. ( -17.60) >DroEre_CAF1 65698 100 - 1 AAAUGCU-GCUGUAUGCUCGAAUAUUCAACAUGUUUUAACAAAGUUUAAAUAAAUAAUUCAAUGGCCAUAAAUCCCCAAUAUUUCGGCAACUCAAGGUAGC ....(((-(((...((((.((((((......(((((.(((...))).)))))..........(((..........))))))))).))))......)))))) ( -14.40) >consensus AAAUGCG_ACUGUAUGUUGAAAUAUUCAACAUGUUUUAACAAAGUUUAAGUAAAUAUUUACAUGGCCAUAAUUCACCAAUAUUUCGACAACUCAUCGUAGC ...((((....((.(((((((((((......(((....))).....................(((..........))))))))))))))))....)))).. (-14.19 = -13.25 + -0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:08 2006