Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,698,928 – 3,699,025 |
Length | 97 |
Max. P | 0.536830 |
Location | 3,698,928 – 3,699,025 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 85.44 |
Mean single sequence MFE | -30.65 |
Consensus MFE | -22.80 |
Energy contribution | -23.78 |
Covariance contribution | 0.97 |
Combinations/Pair | 1.14 |
Mean z-score | -2.13 |
Structure conservation index | 0.74 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.536830 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3698928 97 + 27905053 AAACAACAACUGGUUAAGACAGCUGCAGCGACUGUCCUGACCGACAGGACAGACAGCUUUUCCAGGACAUUCUCGUGAAGCAGCCAAGUCACUCGAU--- .................(((.((((((((..((((((((.....))))))))...)))....((.((.....)).))..)))))...))).......--- ( -29.60) >DroSec_CAF1 57012 97 + 1 AAACAACAACUGGCUAAGACAGCUGCAGCGACUGUCCUGGCCGAAAGGAUAGACAGCUUUUCCAGGACAUUCUCGUGGAGCAGCCAAGUCACUCGAU--- .................(((.(((((.((((.((((((((((....)).............))))))))...))))...)))))...))).......--- ( -30.91) >DroSim_CAF1 59468 97 + 1 AAACAACAACUGGCUAAGACAGUUGCAGCGACUGUCCUGGCCGAAAGGACAGACGGCUUUGCCAGGACAUUCUCGUGGAGCAGCCAAGUCACUCGAU--- ......((((((.......)))))).((.(((((((.((.((....)).)))))((((...(((.((.....)).)))...)))).)))).))....--- ( -33.60) >DroEre_CAF1 57051 97 + 1 AAGCACAAACUGGCUAAGACAGCUGCAGCGAUUGUCCUGGCCGAAAGGACAGACAGCUUUUCCAGGACAUUCUCGUGGAGCGGGCACGUCACUCGCU--- ..(((....(((.......))).)))(((((.((((((.......))))))(((.(((((((((.((.....)).))))).))))..)))..)))))--- ( -31.30) >DroYak_CAF1 55061 97 + 1 AAACACAAACUGGCUAAGACAGCUGCAGCGACUGUCCUGACCGACAGGACAGACAGCUUUUCCAGGACAUUCUCGUGGAGCAGCCAAGUCACUCGAU--- .................(((.((((((((..((((((((.....))))))))...)))..((((.((.....)).)))))))))...))).......--- ( -34.40) >DroAna_CAF1 42097 90 + 1 AC--ACAAACCAGCUAAGACAGCUGCAGCGACAGUCCUGGCCAA-----CAGACAGUU---UCAGGACAUUCUCGUGGAACAGCCAUGCCAGUCAAUAUU ..--......(((((.....)))))....(((.(((((((..((-----(.....)))---))))))).....(((((.....)))))...)))...... ( -24.10) >consensus AAACAAAAACUGGCUAAGACAGCUGCAGCGACUGUCCUGGCCGAAAGGACAGACAGCUUUUCCAGGACAUUCUCGUGGAGCAGCCAAGUCACUCGAU___ .................(((.(((((.((((.((((((((((....)).............))))))))...))))...)))))...))).......... (-22.80 = -23.78 + 0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:03 2006