Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,698,588 – 3,698,683 |
Length | 95 |
Max. P | 0.826573 |
Location | 3,698,588 – 3,698,683 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 79.19 |
Mean single sequence MFE | -31.40 |
Consensus MFE | -19.77 |
Energy contribution | -20.02 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.21 |
Mean z-score | -1.85 |
Structure conservation index | 0.63 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.826573 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3698588 95 + 27905053 --GGCCAAUUGGCUGGUUACUCAAACAGUUUCGUUUCGGGCUCUCGGCCAAAUUGCGGCUU--GCCGCAUUUCAAUGCGGCAG----UACGUCUGUCCACCCA --((.((.((((((((...(((((((......)))).)))...))))))))...(((..((--(((((((....)))))))))----..))).)).))..... ( -34.10) >DroPse_CAF1 59081 99 + 1 CGAACCAAUUGGCCAGUUAGUCAAACGG----GUUUCGGGCGCUCGGCCAAACUGCGGUUUGUGUCGCAUUUCAAUGCAGCAAACAGUCCAGCUGUCCUCCCA .(((((..(((((......)))))...)----)))).(((.(((.((((((((....))))).)))((((....)))))))..((((.....))))...))). ( -29.60) >DroSim_CAF1 59031 95 + 1 --GGCCAAUUGGCUGGUUAGUCAAACAGUUUCGUUUCGGGCUCUCGGCCAAAUUGCGGCUU--GCCGCAUUUCAAUGCGGCAG----UACGUCCGUCCACCCA --((.(..((((((((..((((.(((......)))...)))).))))))))...(((..((--(((((((....)))))))))----..)))..).))..... ( -33.60) >DroYak_CAF1 54722 91 + 1 --GGCCAAUUGGCUGGUGAGUCAAACAGUUUUGUUUCGGGCUCUCGGCCAAAUUGCGGUUU--GCCGCAUUUCAAUGCGGCAG----AACGU----CCACCCA --((....((((((((.(((((.(((......)))...)))))))))))))...(((.(((--(((((((....)))))))))----).)))----....)). ( -38.40) >DroAna_CAF1 41799 85 + 1 ---CCCAAUUGGCCAGUUAUUCAAACAGUU-----UCGGGCUCUCAGCCAAAUUGCGGUUU--GUCGCAUUUCAAUGCGGCAA----UCCAC----CCACCCA ---......(((.............(((((-----...(((.....))).))))).((.((--(((((((....)))))))))----.))..----))).... ( -23.10) >DroPer_CAF1 64529 99 + 1 CGAACCAAUUGGCCAGUUAGUCAAACGG----GUUUCGGGCGCUCGGCCAAACUGCGGUUUGUGUCGCAUUUCAAUGCAGCAAACAGUCCAGCUGUCCUCCCA .(((((..(((((......)))))...)----)))).(((.(((.((((((((....))))).)))((((....)))))))..((((.....))))...))). ( -29.60) >consensus __GGCCAAUUGGCCAGUUAGUCAAACAGUU__GUUUCGGGCUCUCGGCCAAAUUGCGGUUU__GCCGCAUUUCAAUGCGGCAA____UACAUCUGUCCACCCA ..((((..(((((......)))))..............(((.....))).......))))...(((((((....)))))))...................... (-19.77 = -20.02 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:03 2006