Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,665,676 – 3,665,791 |
Length | 115 |
Max. P | 0.596237 |
Location | 3,665,676 – 3,665,791 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.35 |
Mean single sequence MFE | -25.40 |
Consensus MFE | -20.87 |
Energy contribution | -20.06 |
Covariance contribution | -0.81 |
Combinations/Pair | 1.12 |
Mean z-score | -1.52 |
Structure conservation index | 0.82 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.596237 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3665676 115 - 27905053 UCAUUGAGUUGGCAGUUUCCACGGAAUCCAUCUGCAAAUGUUAAUUA---A--UCAAGAAGAUUGACUUUAUGGUGAGUGCACUAAUUAUUUACGCAUUGCCACAUGACAUUUAACAUCU .......(((.((((.(((....))).....))))((((((((.(((---(--((.....)))))).....((((.(((((.............)))))))))..))))))))))).... ( -23.92) >DroSec_CAF1 24333 115 - 1 CCAUUGAGUAGGCAGUUUCCACGAAAUCCAUCUGCAGAUGUUAAUUA---A--UCAAGAAGAUUGACUUUAUGGUGAGUGCACUAAUUAUUUACGCACUGCCACAUGACAUUUAACAAUU ..((((.(((((..(((((...)))))...)))))((((((((.(((---(--((.....)))))).....((((.(((((.............)))))))))..))))))))..)))). ( -25.12) >DroSim_CAF1 26586 115 - 1 CCAUUGAGUAGGCAGUUUCCACGAAAUCCAUCUGCAGAUGUUAAUUA---A--UCAAGAAGAUUGACUUUAUGGUGAGUGCACUAAUUAUUUACGCACUGCCACAUGACAUUUAACAACU ...(((.(((((..(((((...)))))...)))))((((((((.(((---(--((.....)))))).....((((.(((((.............)))))))))..))))))))..))).. ( -24.42) >DroEre_CAF1 23499 119 - 1 CCACUGAGUAGGCAGUUUCCAAGAAA-CCAUCUGCGAAUGUUAAUUAUCAAAUUGAAGAAGAUUAACUUUUUGGUGAGUGCACUAAUUAUUUACGCACUGCCACAUGACAUUCAACAACU .......(((((..(((((...))))-)..)))))((((((((............((((((.....))))))(((.(((((.............))))))))...))))))))....... ( -28.12) >consensus CCAUUGAGUAGGCAGUUUCCACGAAAUCCAUCUGCAAAUGUUAAUUA___A__UCAAGAAGAUUGACUUUAUGGUGAGUGCACUAAUUAUUUACGCACUGCCACAUGACAUUUAACAACU ...........((((................))))((((((((..............((((.....)))).((((.(((((.............)))))))))..))))))))....... (-20.87 = -20.06 + -0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:51 2006