| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 3,657,792 – 3,657,936 |
| Length | 144 |
| Max. P | 0.938870 |
| Location | 3,657,792 – 3,657,896 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 98.08 |
| Mean single sequence MFE | -20.47 |
| Consensus MFE | -19.97 |
| Energy contribution | -19.53 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.98 |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.846495 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3657792 104 + 27905053 ACAUAUGCAAACAGAAAGCAAUCAAAAUGCAUAUGAGAUCCUUAAGCUGUGAUUUAAUGUGCCACAAGGAGAAGCUGCAUUUUUUUGCACCUAAUAAUUAUUAA .....((((((.(((.(((..((.....((((((.((((((.......).))))).))))))......))...)))...))).))))))............... ( -19.20) >DroSec_CAF1 16547 104 + 1 ACAUAUGCAAACAGAAAGCAAUCAAAAUGCAUAUGAGAUCCUUAAGCUGCGAUUUAAUGUGCCACAAGAAGAAGCUGCAUUUUUUCGCACCUAAUAAUUAUUAA .((((((((....((......))....)))))))).........((.(((((...(((((((..(.....)..)).)))))...))))).))............ ( -21.10) >DroSim_CAF1 18782 104 + 1 ACAUAUGCAAACAGAAAGCAAUCAAAAUGCAUAUGAGAUCCUUAAGCUGCGAUUUAAUGUGCCACAAGAAGAAGCUGCAUUUUUUCGCACCUAAUAAUUAUUAA .((((((((....((......))....)))))))).........((.(((((...(((((((..(.....)..)).)))))...))))).))............ ( -21.10) >consensus ACAUAUGCAAACAGAAAGCAAUCAAAAUGCAUAUGAGAUCCUUAAGCUGCGAUUUAAUGUGCCACAAGAAGAAGCUGCAUUUUUUCGCACCUAAUAAUUAUUAA .((((((((....((......))....)))))))).........((.(((((...(((((((..(.....)..)).)))))...))))).))............ (-19.97 = -19.53 + -0.44)
| Location | 3,657,826 – 3,657,936 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 97.58 |
| Mean single sequence MFE | -27.87 |
| Consensus MFE | -25.42 |
| Energy contribution | -25.20 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.75 |
| Structure conservation index | 0.91 |
| SVM decision value | 1.27 |
| SVM RNA-class probability | 0.938870 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3657826 110 - 27905053 AUCCAGAUUUCACACGCCAUGAUGUGCAUAAAAAUGCGCAUUAAUAAUUAUUAGGUGCAAAAAAAUGCAGCUUCUCCUUGUGGCACAUUAAAUCACAGCUUAAGGAUCUC ((((...........((((((((((((((....)))))))))..........((.((((......)))).)).......)))))...((((........))))))))... ( -26.00) >DroSec_CAF1 16581 110 - 1 AUCCAGAUAUCACACGCCAUGAUGUGCAUAAAAAUGCGCAUUAAUAAUUAUUAGGUGCGAAAAAAUGCAGCUUCUUCUUGUGGCACAUUAAAUCGCAGCUUAAGGAUCUC ((((...............((((((((((....)))))))))).......((((((((((...((((..(((.(.....).))).))))...))))).)))))))))... ( -28.80) >DroSim_CAF1 18816 110 - 1 AUCCAGAUUUCACACGCCAUGAUGUGCAUAAAAAUGCGCAUUAAUAAUUAUUAGGUGCGAAAAAAUGCAGCUUCUUCUUGUGGCACAUUAAAUCGCAGCUUAAGGAUCUC ((((...............((((((((((....)))))))))).......((((((((((...((((..(((.(.....).))).))))...))))).)))))))))... ( -28.80) >consensus AUCCAGAUUUCACACGCCAUGAUGUGCAUAAAAAUGCGCAUUAAUAAUUAUUAGGUGCGAAAAAAUGCAGCUUCUUCUUGUGGCACAUUAAAUCGCAGCUUAAGGAUCUC ((((...........((((((((((((((....)))))))))..........((.((((......)))).)).......)))))...((((........))))))))... (-25.42 = -25.20 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:48 2006