Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,657,111 – 3,657,208 |
Length | 97 |
Max. P | 0.618273 |
Location | 3,657,111 – 3,657,208 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 96.05 |
Mean single sequence MFE | -27.12 |
Consensus MFE | -22.85 |
Energy contribution | -23.10 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.89 |
Structure conservation index | 0.84 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.618273 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3657111 97 - 27905053 AAAACCAAAAACGUUUCCGUCCCAGAAAGGGCGGAGGUCCAAAUCCAACUGCCCGGCAACAGCUCCGGCGAUUAUCUGCCGGACUUUGCACAAAAUU ...........((..(((((((......)))))))((.......)).......))((((.((.(((((((......)))))))))))))........ ( -29.80) >DroSec_CAF1 15869 97 - 1 AAAACCGAAAACGUUUCCGACCCAGAAAGGGCGGAGGUCCAGAUCCAACUGCCCGGCAACAGCUCCGGCGAUUAUCUGCCGGACUUUCCACAAAAUU ...............((((.(((.....)))))))((..(((......))).))((.((.((.(((((((......)))))))))))))........ ( -27.60) >DroSim_CAF1 18104 97 - 1 AAAACCGAAAACGUUUCCGACCCAGAAAGGGCGGAGGUCCAGAUCCAACUGCCCGGCAACAGCUCAAGCGAUUAUCUGCCGGACUUUCCACAAAAUU ......((((...((((((.(((.....)))))))))..(((......))).((((((...((....)).......))))))..))))......... ( -24.20) >DroEre_CAF1 15244 97 - 1 AAAACCGAAAACGUUUCCGUCCCAGAAAGGGCGGAUGUCCAAAUCCAACUGCCCGGCAACAGCUCCGGCGAUUAUCUGCCGGACUUUCCACAAAAUU ......((((..(((.((((((......))))((((......))))........)).)))...(((((((......))))))).))))......... ( -26.90) >consensus AAAACCGAAAACGUUUCCGACCCAGAAAGGGCGGAGGUCCAAAUCCAACUGCCCGGCAACAGCUCCGGCGAUUAUCUGCCGGACUUUCCACAAAAUU ...............((((.(((.....))))))).((((..........((..(....).))...((((......))))))))............. (-22.85 = -23.10 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:46 2006