Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,654,192 – 3,654,294 |
Length | 102 |
Max. P | 0.988892 |
Location | 3,654,192 – 3,654,294 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 90.49 |
Mean single sequence MFE | -29.00 |
Consensus MFE | -25.60 |
Energy contribution | -25.93 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.99 |
Structure conservation index | 0.88 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.761020 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3654192 102 + 27905053 AGGCGUAAAUAAAUAAAUAAUCAUAUUUCUCAUUUUCCGAGUGGACAGCGUGGGCCUUACACCUGUGCUAGUGCCCACCGGAAAUGGAAAAUGUUUUAGUUG ......................((((((..(((((.(((.((((((((((..((.......))..)))).))..))))))))))))..))))))........ ( -28.40) >DroSec_CAF1 12943 97 + 1 AGGU-UGUGU----AAAUAAUCAAAUUUCUCAUUUUCCGAGUGGAAAGCGUGGGCCUUGCACCUGUGUUAGUGCCCACCGGAAAUGGAAAAUGUUUUAGAUG .(((-(((..----..))))))..((((..(((((.(((.((.....))((((((((.(((....))).)).))))))))))))))..)))).......... ( -29.90) >DroSim_CAF1 15161 101 + 1 AGGC-UGUGUCAAUAAAUAAUCAUAUUUCUCAUUUUCCGAGUGGAAAGCGUGGGCCUUGCACCUGUGUUAGUGCCCACCGGAAAUGGAAAAUGUUUUAGAUG .(..-(((........)))..)((((((..(((((.(((.((.....))((((((((.(((....))).)).))))))))))))))..))))))........ ( -28.70) >consensus AGGC_UGUGU_AAUAAAUAAUCAUAUUUCUCAUUUUCCGAGUGGAAAGCGUGGGCCUUGCACCUGUGUUAGUGCCCACCGGAAAUGGAAAAUGUUUUAGAUG ......................((((((..(((((.(((.((.....))((((((((..((....))..)).))))))))))))))..))))))........ (-25.60 = -25.93 + 0.33)
Location | 3,654,192 – 3,654,294 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 90.49 |
Mean single sequence MFE | -26.87 |
Consensus MFE | -25.29 |
Energy contribution | -25.73 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.03 |
Mean z-score | -2.98 |
Structure conservation index | 0.94 |
SVM decision value | 2.14 |
SVM RNA-class probability | 0.988892 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3654192 102 - 27905053 CAACUAAAACAUUUUCCAUUUCCGGUGGGCACUAGCACAGGUGUAAGGCCCACGCUGUCCACUCGGAAAAUGAGAAAUAUGAUUAUUUAUUUAUUUACGCCU .........((((((((((((((((((((((...((...(((.....)))...))))))))).))).))))).)))).)))..................... ( -26.30) >DroSec_CAF1 12943 97 - 1 CAUCUAAAACAUUUUCCAUUUCCGGUGGGCACUAACACAGGUGCAAGGCCCACGCUUUCCACUCGGAAAAUGAGAAAUUUGAUUAUUU----ACACA-ACCU .........((.(((((((((((((((((((((......)))))(((((....))))))))).))).))))).))))..)).......----.....-.... ( -26.70) >DroSim_CAF1 15161 101 - 1 CAUCUAAAACAUUUUCCAUUUCCGGUGGGCACUAACACAGGUGCAAGGCCCACGCUUUCCACUCGGAAAAUGAGAAAUAUGAUUAUUUAUUGACACA-GCCU .........((((((((((((((((((((((((......)))))(((((....))))))))).))).))))).)))).)))................-.... ( -27.60) >consensus CAUCUAAAACAUUUUCCAUUUCCGGUGGGCACUAACACAGGUGCAAGGCCCACGCUUUCCACUCGGAAAAUGAGAAAUAUGAUUAUUUAUU_ACACA_GCCU .........((((((((((((((((((((((((......)))))(((((....))))))))).))).))))).)))).)))..................... (-25.29 = -25.73 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:45 2006