Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,653,699 – 3,653,797 |
Length | 98 |
Max. P | 0.558921 |
Location | 3,653,699 – 3,653,797 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 97.45 |
Mean single sequence MFE | -25.75 |
Consensus MFE | -23.41 |
Energy contribution | -23.23 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.05 |
Mean z-score | -1.66 |
Structure conservation index | 0.91 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.537225 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3653699 98 + 27905053 GCGUACUAAAUGUACUACAAAACGUGGCAACAACCAACCACCGAGACAGCGACACCAACGAAGCUAUGACGUCGGUGCUGAAGUGUUGCCAACACUUU ..((((.....)))).........((((((((......((((((...(((..(......)..)))......))))))......))))))))....... ( -26.80) >DroSec_CAF1 12418 98 + 1 GCGUACUAAAUGUACUACAAAACGUGGCAACAACCAACCACAGAGACAGCGACACCAACGAAGCUAUGACGUCGGUGCUGAAGUGUUGCCAACACUCU ..((((.....)))).........((((((((......(((...((((((..(......)..))).....))).)))......))))))))....... ( -23.60) >DroSim_CAF1 14636 98 + 1 GCGUACUAAAUGUACUACAAAACGUGGCAACAACCAACCACAGAGACAGCGACACCAACGAAGCUAUGACGUCGGUGCUGAAGUGUUGCCAACACUCU ..((((.....)))).........((((((((......(((...((((((..(......)..))).....))).)))......))))))))....... ( -23.60) >DroEre_CAF1 11885 98 + 1 GCGUACUAAAUGUACUACAAAACGUGGCAACAACCAACCGCAGAGACAGCGACACCAGCGAAGCUAUGACGUCGGUGCUGAGGUGUUGCCAACACUCU ..((((.....)))).........((((((((.((...(((.......))).((((.(((.........))).))))....))))))))))....... ( -29.00) >consensus GCGUACUAAAUGUACUACAAAACGUGGCAACAACCAACCACAGAGACAGCGACACCAACGAAGCUAUGACGUCGGUGCUGAAGUGUUGCCAACACUCU ..((((.....)))).........((((((((......(((...((((((..(......)..))).....))).)))......))))))))....... (-23.41 = -23.23 + -0.19)
Location | 3,653,699 – 3,653,797 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 97.45 |
Mean single sequence MFE | -31.65 |
Consensus MFE | -31.02 |
Energy contribution | -30.90 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.06 |
Mean z-score | -1.52 |
Structure conservation index | 0.98 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.558921 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3653699 98 - 27905053 AAAGUGUUGGCAACACUUCAGCACCGACGUCAUAGCUUCGUUGGUGUCGCUGUCUCGGUGGUUGGUUGUUGCCACGUUUUGUAGUACAUUUAGUACGC (((((((.(((((((..((((((((((((.........)))))))..(((((...)))))))))).))))))))))))))...((((.....)))).. ( -33.20) >DroSec_CAF1 12418 98 - 1 AGAGUGUUGGCAACACUUCAGCACCGACGUCAUAGCUUCGUUGGUGUCGCUGUCUCUGUGGUUGGUUGUUGCCACGUUUUGUAGUACAUUUAGUACGC (((((((.(((((((..((((((((((((.........)))))))..(((.......)))))))).))))))))))))))...((((.....)))).. ( -31.60) >DroSim_CAF1 14636 98 - 1 AGAGUGUUGGCAACACUUCAGCACCGACGUCAUAGCUUCGUUGGUGUCGCUGUCUCUGUGGUUGGUUGUUGCCACGUUUUGUAGUACAUUUAGUACGC (((((((.(((((((..((((((((((((.........)))))))..(((.......)))))))).))))))))))))))...((((.....)))).. ( -31.60) >DroEre_CAF1 11885 98 - 1 AGAGUGUUGGCAACACCUCAGCACCGACGUCAUAGCUUCGCUGGUGUCGCUGUCUCUGCGGUUGGUUGUUGCCACGUUUUGUAGUACAUUUAGUACGC (((((((.(((((((((...((((((.((.........)).))))))(((.......)))...)).))))))))))))))...((((.....)))).. ( -30.20) >consensus AGAGUGUUGGCAACACUUCAGCACCGACGUCAUAGCUUCGUUGGUGUCGCUGUCUCUGUGGUUGGUUGUUGCCACGUUUUGUAGUACAUUUAGUACGC (((((((.(((((((..((((((((((((.........)))))))..(((.......)))))))).))))))))))))))...((((.....)))).. (-31.02 = -30.90 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:43 2006