Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,651,858 – 3,651,967 |
Length | 109 |
Max. P | 0.583543 |
Location | 3,651,858 – 3,651,967 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 94.65 |
Mean single sequence MFE | -26.38 |
Consensus MFE | -23.20 |
Energy contribution | -22.95 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.12 |
Mean z-score | -1.54 |
Structure conservation index | 0.88 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.583543 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3651858 109 + 27905053 UUUGUUCAAGUCAGUCCCAGCUGACGUGGAUGUGUAAUUUUCAUGGCAUUCACACACAAGAAAGUUAUGCCAGCGUCAUCAGUUUUUCUAAACUUUAAUGAGAAACUUC ...(((((.((((((....)))))).)))))(((((((((((.((...........)).)))))))))))..........((((((((...........)))))))).. ( -26.80) >DroSec_CAF1 10583 109 + 1 UUUGUUCAAGUCAGUCCCAGCUGACGUGGAUGUGUAAUUUUCAUGGCAUUCACACACAAGAAAGUUAUGUCAGCGUCAUCAGUUCUUCUAAACUUUAAUGGGAAAUUUC ..............((((((.((((((.(((..(((((((((.((...........)).)))))))))))).)))))).)((((......))))....)))))...... ( -25.40) >DroSim_CAF1 12808 109 + 1 UUUGUUCAAGUCAGUCCCAGCUGACGUGGAUGUGUAAUUUUCAUGGCAUUCACACACAAGAAAGUUAUGCCAGCGUCAUCAGUUCUUCUAAACUUUAAUGGGAAAUUUC ..............((((((.((((((....(((((((((((.((...........)).)))))))))))..)))))).)((((......))))....)))))...... ( -26.10) >DroEre_CAF1 10146 109 + 1 UUUGUUCGAGUCAGUCCCAGUUGACGUGGAUGUGUAAUUUUCAUCGCAUUCACACACAAGAAAGUUAUACUAGCGUCAUCAGUUGUUCUAAACUUGUAUGGGAAAUUUC .......(((....((((((.((((((....(((((((((((.................)))))))))))..)))))).)((((......))))....)))))...))) ( -27.23) >consensus UUUGUUCAAGUCAGUCCCAGCUGACGUGGAUGUGUAAUUUUCAUGGCAUUCACACACAAGAAAGUUAUGCCAGCGUCAUCAGUUCUUCUAAACUUUAAUGGGAAAUUUC .......((((...((((((.((((((....(((((((((((.((...........)).)))))))))))..)))))).)((((......))))....))))).)))). (-23.20 = -22.95 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:41 2006