Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 677,602 – 677,705 |
Length | 103 |
Max. P | 0.720570 |
Location | 677,602 – 677,705 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 90.12 |
Mean single sequence MFE | -22.49 |
Consensus MFE | -15.29 |
Energy contribution | -14.74 |
Covariance contribution | -0.55 |
Combinations/Pair | 1.15 |
Mean z-score | -3.33 |
Structure conservation index | 0.68 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.720570 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 677602 103 + 27905053 AUAUACAUA-----CAGCAUAGUGUUAUACCAUAUUAUCACAAAGCAAAUGUUUUGUAUGAAAAUAAAUUUAUACAUUUUUGCCCUAUGCAGGCGAAGUAUCACUUCA .........-----..(((((((((.(((......))).)))..(((((.....((((((((......))))))))..))))).))))))....((((.....)))). ( -21.60) >DroSec_CAF1 96908 108 + 1 AUAUGCCUAUGGACCAGCCUUAUGUUAUACCAUAUUAUCACAAAACAAAUGUUUUGUAUGAAAAUAAAUUUAUACAUUUUCGCCCCAUCCAGGCGAAGUAUCACUUCA ....((((((((....((...((((.......((((.(((((((((....)))))))..)).)))).......))))....)).))))..))))((((.....)))). ( -22.24) >DroSim_CAF1 95316 108 + 1 AUAUGCCUAUGGACCAGCAUAAUGUUAUACCAUAUUAUCACAAAACAAAUGUUUUGUAUGAAAAUAGAUUUAUACAUUUUCUCCCCAUCCAGGCGAAGUAUCACUUCA ....((((((((...((...(((((.......((((.(((((((((....)))))))..)).)))).......)))))..))..))))..))))((((.....)))). ( -23.64) >consensus AUAUGCCUAUGGACCAGCAUAAUGUUAUACCAUAUUAUCACAAAACAAAUGUUUUGUAUGAAAAUAAAUUUAUACAUUUUCGCCCCAUCCAGGCGAAGUAUCACUUCA ..((((...............((((.......((((.(((((((((....)))))))..)).)))).......)))).((((((.......))))))))))....... (-15.29 = -14.74 + -0.55)
Location | 677,602 – 677,705 |
---|---|
Length | 103 |
Sequences | 3 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 90.12 |
Mean single sequence MFE | -28.47 |
Consensus MFE | -18.19 |
Energy contribution | -20.30 |
Covariance contribution | 2.11 |
Combinations/Pair | 1.03 |
Mean z-score | -3.15 |
Structure conservation index | 0.64 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.524692 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 677602 103 - 27905053 UGAAGUGAUACUUCGCCUGCAUAGGGCAAAAAUGUAUAAAUUUAUUUUCAUACAAAACAUUUGCUUUGUGAUAAUAUGGUAUAACACUAUGCUG-----UAUGUAUAU .((((.....)))).....(((((((((((..(((((.((......)).))))).....)))))))))))...((((((((((....)))))))-----)))...... ( -23.10) >DroSec_CAF1 96908 108 - 1 UGAAGUGAUACUUCGCCUGGAUGGGGCGAAAAUGUAUAAAUUUAUUUUCAUACAAAACAUUUGUUUUGUGAUAAUAUGGUAUAACAUAAGGCUGGUCCAUAGGCAUAU .((((.....))))((((((((.((.((((((((........))))))).((((((((....))))))))....((((......)))).).)).))))..)))).... ( -33.30) >DroSim_CAF1 95316 108 - 1 UGAAGUGAUACUUCGCCUGGAUGGGGAGAAAAUGUAUAAAUCUAUUUUCAUACAAAACAUUUGUUUUGUGAUAAUAUGGUAUAACAUUAUGCUGGUCCAUAGGCAUAU .((((.....))))((((((((.((.(...(((((.((.(((((((.((..(((((((....))))))))).)))).))).))))))).).)).))))..)))).... ( -29.00) >consensus UGAAGUGAUACUUCGCCUGGAUGGGGCGAAAAUGUAUAAAUUUAUUUUCAUACAAAACAUUUGUUUUGUGAUAAUAUGGUAUAACAUUAUGCUGGUCCAUAGGCAUAU .((((.....))))((((((((.((..(((((((........))))))).((((((((....)))))))).....................)).))))..)))).... (-18.19 = -20.30 + 2.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:43 2006