Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,634,956 – 3,635,054 |
Length | 98 |
Max. P | 0.617157 |
Location | 3,634,956 – 3,635,054 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 87.21 |
Mean single sequence MFE | -19.36 |
Consensus MFE | -16.96 |
Energy contribution | -16.72 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.19 |
Mean z-score | -1.42 |
Structure conservation index | 0.88 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.617157 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3634956 98 - 27905053 GGGAAAAGUGAUAUUUAUACAUCUGUGGUCUGAUUUUUGCACAGGCCACAGUAACAAACUCACACACAU----ACACAAAGACACCACUAACACAGACGGAC .......((((...........((((((((((.........))))))))))........))))......----............................. ( -18.61) >DroSec_CAF1 2642 86 - 1 GGGAAAAGUGAUAUUUAUACAUCUGUGGUCUGAUUUUUGCACAGGCCACAGUAACAAACCCACACA----------------CACCACUAACAAAGACGGAC (((....(((.......)))..((((((((((.........)))))))))).......))).....----------------.................... ( -19.70) >DroSim_CAF1 2644 98 - 1 GGGAAAAGUGAUAUUUAUACAUCUGUGGUCUGAUUUUUGCACAGGCCACAGUAACAAGCCCACACACAC----ACACAAACACACCACUAACAAAGACGGAC (((....(((.......)))..((((((((((.........)))))))))).......)))........----............................. ( -19.40) >DroEre_CAF1 2448 94 - 1 GGGAACAGUGAUAUUUUUACAUCUGUGGUCUGAUUUUUGCACAGGCCGCAGUAACAAACACACAC--------ACACAGACACACCUCUAACACAGACGGAC .......(((............((((((((((.........))))))))))...........)))--------...........(((((.....))).)).. ( -19.70) >DroYak_CAF1 2523 102 - 1 GGGAAAAGUGAUAUUUUUACAUCUGUGGUCUGAUUUUUGCACAGGUCACAGUAACAAACCCACACAUACAAGCACACAAACACACCACUAACACAGACGGAU (((....((((.....))))..(((((..(((.........)))..))))).......)))......................................... ( -19.40) >consensus GGGAAAAGUGAUAUUUAUACAUCUGUGGUCUGAUUUUUGCACAGGCCACAGUAACAAACCCACACA_A_____ACACAAACACACCACUAACACAGACGGAC (((....(((.......)))..((((((((((.........)))))))))).......)))......................................... (-16.96 = -16.72 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:38 2006