Locus 1207

Sequence ID 3R_DroMel_CAF1
Location 3,634,792 – 3,634,898
Length 106
Max. P 0.506939
window1974

overview

Window 4

Location 3,634,792 – 3,634,898
Length 106
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 96.48
Mean single sequence MFE -25.15
Consensus MFE -21.84
Energy contribution -21.95
Covariance contribution 0.11
Combinations/Pair 1.03
Mean z-score -1.32
Structure conservation index 0.87
SVM decision value -0.05
SVM RNA-class probability 0.506939
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3634792 106 - 27905053
AAACGACAACUAUAUAGCAAUAUAUGCCCAUUGAGUGCCUUAUAUCAUUUGAUAAUAAUCCACAAGGUGUCUACUAUGCCGGACAGGAGCUAUCCGGCGUUGUUGA
...(((((((((((((....))))))..((((..(((..(((((((....))).))))..)))..))))........((((((.((...)).))))))))))))). ( -29.40)
>DroVir_CAF1 10362 106 - 1
ACACGCAAACUAUAUAGCAAUAUAUGCCCAUUGAGUGCCUUAUAUCAUUUGAUAAUAAUCCACAAGGUGUCUACUAUGCCGGACAGGAGCUAUCUGGCGUUGUUGA
.(((......((((((....))))))........(((..(((((((....))).))))..)))...)))((.((.((((((((.((...)).)))))))).)).)) ( -22.70)
>DroGri_CAF1 2664 106 - 1
ACACGCAAACUAUAUAGCAAUAUAUGCCCAUUGAGUGCCUUAUAUCAUUUGAUAAUAAUCCACAAGGUGUCUACUAUGCCGGACAGGAGCUAUCUGGCGUUGUUGA
.(((......((((((....))))))........(((..(((((((....))).))))..)))...)))((.((.((((((((.((...)).)))))))).)).)) ( -22.70)
>DroEre_CAF1 2332 106 - 1
AACCGACAACUAUAUAGCAAUAUAUGCCCAUUGAGUGCCUUAUAUCAUUUGAUAACAAUCCACAAGGUGUCUACUAUGCCGGACAGGAGCUAUCCGGCGUUGUUGA
...(((((((((((((....))))))..((((..(((.....((((....))))......)))..))))........((((((.((...)).))))))))))))). ( -27.50)
>DroMoj_CAF1 3411 106 - 1
ACACGCAAACUAUAUAGCAAUAUAUGCCCAUUGAGUGCCUUAUAUCAUUUGAUAAUAAUCCACAAGGUGUCUACUAUGCCGGACAGGAACUAUCUGGCGUUGUUGA
.(((......((((((....))))))........(((..(((((((....))).))))..)))...)))((.((.((((((((.((...)).)))))))).)).)) ( -22.70)
>DroPer_CAF1 2192 106 - 1
ACACGAUAACUAUAUAGCAAUAUAUGCCAAUUGAGUGCCUUAUAUCAUUUGAUAAUAAUCCACAAGGUGUCUACUAUGCCGGACAGGAGCUAUCUGGCGUUGUUGA
...(((((((.(((((....)))))((((....(((.(((..((((....))))....(((....(((((.....)))))))).))).)))...))))))))))). ( -25.90)
>consensus
ACACGAAAACUAUAUAGCAAUAUAUGCCCAUUGAGUGCCUUAUAUCAUUUGAUAAUAAUCCACAAGGUGUCUACUAUGCCGGACAGGAGCUAUCUGGCGUUGUUGA
..........((((((....))))))..((((..(((..(((((((....))).))))..)))..))))((.((.((((((((.((...)).)))))))).)).)) (-21.84 = -21.95 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:37 2006