Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,629,930 – 3,630,021 |
Length | 91 |
Max. P | 0.931424 |
Location | 3,629,930 – 3,630,021 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 77.83 |
Mean single sequence MFE | -23.78 |
Consensus MFE | -18.57 |
Energy contribution | -18.65 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.09 |
Mean z-score | -1.67 |
Structure conservation index | 0.78 |
SVM decision value | 1.21 |
SVM RNA-class probability | 0.931424 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3629930 91 + 27905053 GAAAUUUGCUCGCCGUUGUAAUAAAUGGCAGCGGCACGCGAUAAGUUAAAUUCGCAAUUUAUUGGCAUUUUCAGUGGUUU-----GGAGUGGCUUU----------------- .....(..(((((((((((........))))))))..((((..........))))...(((((((.....)))))))...-----.)))..)....----------------- ( -25.90) >DroPse_CAF1 3910 113 + 1 GAAAUUUGUUCACCGGUGUAGUACACGGCAGCGGCACGCGAUAAAUUAAAAUCACAAUCUAUUGACAUUUUCACUGGUCAAUCGUUUGGCAAAUUGCAUAUCAUUAACAAAAG ....((((((..(((.(((.(....).))).))).....((((...........(((.(.((((((..........)))))).).)))((.....)).))))...)))))).. ( -20.60) >DroSec_CAF1 4045 82 + 1 GAAAUUUGCUCGCCGUUGUAAUAAAUGGCAGCGGCACGCGAUAAGUUAAAUUCACAAUUUAUUGGCAUUUUCAGUGGUUU--------------UU----------------- ((((..(((..((((((((........))))))))...(((((((((........)))))))))))).))))........--------------..----------------- ( -24.20) >DroSim_CAF1 5369 82 + 1 GAAAUUUGCUCGCCGUUGUAAUAAAUGGCAGCGGCACGCGAUAAGUUAAAUUCACAAUUUAUUGGCAUUUUCAGUGGUUU--------------UU----------------- ((((..(((..((((((((........))))))))...(((((((((........)))))))))))).))))........--------------..----------------- ( -24.20) >DroEre_CAF1 5089 91 + 1 GAAACUCGCUCGCCGGUGUAAUAAACAGCAGCGGCACGCGAUAAGUUGAAUUCACAAUUUAUUGGCAUUUUCAGUGGCAU-----GCAGCAGAUUU----------------- .......(((.((((.(((........))).))))..(((((((((((......)))))))))(.(((.....))).)..-----)))))......----------------- ( -25.00) >DroYak_CAF1 4780 91 + 1 GAAAUUUGCUCGCCGGUGUAAUAAAUGGCAGCGGCACGCGAUAAGUUAAAUUCACAAUUUAUUGGCAUUUUCAGUGGUAU-----GGAGUAGCUCU----------------- .....((((((((((.(((........))).))))..((((((((((........)))))))).))..............-----.))))))....----------------- ( -22.80) >consensus GAAAUUUGCUCGCCGGUGUAAUAAAUGGCAGCGGCACGCGAUAAGUUAAAUUCACAAUUUAUUGGCAUUUUCAGUGGUUU_____G_AG_AG_UUU_________________ ((((..(((..((((.(((........))).))))...(((((((((........)))))))))))).))))......................................... (-18.57 = -18.65 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:35 2006