Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,629,485 – 3,629,605 |
Length | 120 |
Max. P | 0.797130 |
Location | 3,629,485 – 3,629,605 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.83 |
Mean single sequence MFE | -37.07 |
Consensus MFE | -20.76 |
Energy contribution | -22.18 |
Covariance contribution | 1.42 |
Combinations/Pair | 1.33 |
Mean z-score | -1.83 |
Structure conservation index | 0.56 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.797130 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3629485 120 + 27905053 GAACAACCUUGAGCACAUACUCCACAUUGCCGAAAGGAAGUCUACAGGUGGCUGGCAGAUUUUCAGGCAGCUGAAAAUUGAAGUCACCCAAUCGAAAGGUACCAUUCUCUAGCUGAAGUA .......(((.(((...............((....)).........(((((((....(((((((((....)))))))))..)))))))..(((....)))...........))).))).. ( -33.90) >DroSec_CAF1 3600 120 + 1 GGACAACCUUGAGCACAUACUUCACAUUGCCGAAAGGAAGGCUACAGGUGGCAGGCAGAUUUUCAGGGAGCUGAAAAUUGAAGUCACCCAAUCGGAAAGUACCAGGCUCUAGCUGAAGUA .......((.((((...(((((..(((((((....)).........((((((.....(((((((((....)))))))))...)))))))))).)..)))))....)))).))........ ( -35.50) >DroSim_CAF1 4924 120 + 1 GAACAACCUUGAGCACAUACUCCACAUUGCCGAAAGGAAGGCUACAGGUGGCUGGCAGAUUUUCAGGGAGCUGAAAAUUGAAGUCACCCAAUCGGAAAGUACCAGGCUCCAGUUGAAGUA ...((((...((((...((((((.....(((........)))....(((((((....(((((((((....)))))))))..))))))).....)))..)))....))))..))))..... ( -39.40) >DroEre_CAF1 4647 120 + 1 GUACGACCUUCAGCACAUAGUCCACACUGCCAAAGGGAAGCCUGCAGCUGGCUGGCAGGUUUUCAGGCAGCUGAAACUCGAAGUCACCCAGUGGGAAGGUGCCAGGCUGCAGGCGAAUGG ...((.(((.((((.(((..(((.(((((......((((((((((((....)).)))))))))).((..(((.........)))..))))))))))..)))....)))).)))))..... ( -45.20) >DroYak_CAF1 4335 120 + 1 GAACAACCUUUAGCGUAUACUCCACAUUGCCAAAAGGAAGCCUACAGGUGGCUGGAAGAUGUUCAGGAAACUGAAACUUAAAGUCACCCAAUCGAAAAGUACCAGGCUCUAGCCGAAGAG .......(((..((......(((............)))(((((...(((((((..(((...(((((....))))).)))..))))))).....(........))))))...))..))).. ( -33.50) >DroPer_CAF1 3250 120 + 1 UAAUCACUUUAAGGGUAUACUCGACAGAGCCAUGACCAACUCGACAAGUGGCUGGCAGACUUUCGGGAAGUUCAAAGUCAAAGUUCCACAGUUGGGUAAUGCCCGGAAGUAGGCGUUGUC .....(((((..(((((((((((((...((((.(.(((.((.....)))))))))).((((((.((.....))))))))...........))))))).)))))).))))).......... ( -34.90) >consensus GAACAACCUUGAGCACAUACUCCACAUUGCCAAAAGGAAGCCUACAGGUGGCUGGCAGAUUUUCAGGAAGCUGAAAAUUGAAGUCACCCAAUCGGAAAGUACCAGGCUCUAGCCGAAGUA .......((.((((...((((...(((((((....)).........(((((((....(((((((((....)))))))))..))))))))))).)...))))....)))).))........ (-20.76 = -22.18 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:34 2006